PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00139678001
Common NameGSBRNA2T00139678001, LOC106358576
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 297aa    MW: 32655.2 Da    PI: 9.0609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00139678001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.48.1e-14556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE+e l+ +v+++G+g Wk I r         +R+  ++k++w+++
  GSBRNA2T00139678001  5 KLKWTEEEEEALLAGVRKHGPGKWKNILRDPEfagqlSNRSNIDLKDKWRNL 56
                         689***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.046162IPR017930Myb domain
SuperFamilySSF466894.24E-16359IPR009057Homeodomain-like
SMARTSM007176.3E-9459IPR001005SANT/Myb domain
PfamPF002497.1E-10556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-15556IPR009057Homeodomain-like
CDDcd116605.07E-14756No hitNo description
SMARTSM005263.1E-15121187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.102.3E-11122199IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.05E-14122202IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.389123199IPR005818Linker histone H1/H5, domain H15
PfamPF005382.3E-11125197IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGNQKLKWTE EEEEALLAGV RKHGPGKWKN ILRDPEFAGQ LSNRSNIDLK DKWRNLSVAP  60
DIQGSKDKVR TPKIKAAAFQ LAAVAAASTP SPSSNHSPVP PLPRSGSDLS IDDSCNFMVD  120
AKNAPRYDGM IFEALSSLTD ANGSDVTAIY NFIVQKGHEV PPNFKRILGS RLRRLASQGK  180
LEKVSQLKSG TQNFYKMNNH SFMAMRTPLV ARPKEVNVKP RQANSQGLTV SQEKVDHAAG  240
TAAFKFVEVD EKLELLNAAV EDRDRMIELA EQAELILLLA EELHKECSEG KIVALN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.60340.0seed
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00139678001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728871e-135AC172887.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004B22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653850.10.0telomere repeat-binding factor 4 isoform X1
SwissprotF4I7L11e-128TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A0D3DQ140.0A0A0D3DQ14_BRAOL; Uncharacterized protein
STRINGBo8g067280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-116MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]