PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140364001
Common NameGSBRNA2T00140364001, LOC106431267
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 209aa    MW: 23842.2 Da    PI: 10.3177
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140364001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.13.8e-32151411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkd 89 
                          lp+G+rFhPt++el+ +yL +k+ +++l+  ++i+ +d++ ++P ++p   ++ee++ yfFsk++++ ++ ++r + +  +gyWk   k+
  GSBRNA2T00140364001  15 LPVGYRFHPTEQELILHYLLPKAFSSPLPS-SIIPVFDVFFSHPLTFPG--DQEERQRYFFSKKRQEVSSnDHRIKISSGNGYWKPIRKE 101
                          799*************************99.88***************3..4577899****999988751666666899********** PP

                  NAM  90 kevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + v++  g++vg+++tLvfy  ++++++++kt+W+m ey l
  GSBRNA2T00140364001 102 RGVIV-CGRTVGIRRTLVFYgtNNTSSSSNKTRWCMTEYCL 141
                          *****.999***********7656778889*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-409161IPR003441NAC domain
PROSITE profilePS5100536.62915161IPR003441NAC domain
PfamPF023652.4E-2016141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEVEKRIMVN GSMKLPVGYR FHPTEQELIL HYLLPKAFSS PLPSSIIPVF DVFFSHPLTF  60
PGDQEERQRY FFSKKRQEVS SNDHRIKISS GNGYWKPIRK ERGVIVCGRT VGIRRTLVFY  120
GTNNTSSSSN KTRWCMTEYC LAGFSSTKVF GEWAVYKVYK RKEPKGRRQR KSRVRDAEEK  180
EFTIGSNHEI GPPPASPPTS ADESGSII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-2111621169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140364001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667601e-160KC966760.1 Brassica napus NAC transcription factor 84 (NAC84.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013727536.11e-154NAC domain-containing protein 41
TrEMBLA0A3P6AFH21e-152A0A3P6AFH2_BRAOL; Uncharacterized protein
STRINGBo3g009490.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.11e-106NAC domain containing protein 84
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]