PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140457001
Common NameGSBRNA2T00140457001, LOC106426905, LOC106441475
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 384aa    MW: 43224.5 Da    PI: 7.849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140457001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176285123
                         EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                         ++C+ Cgk F+    L +H+   H
  GSBRNA2T00140457001 62 FRCGECGKGFRYEKCLSNHQAGmH 85
                         89*****************98666 PP
2zf-C2H210.70.0017336358123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C  C+k+Fs+   L  H+ +H
  GSBRNA2T00140457001 336 HQCRLCSKVFSSYQALGGHQTSH 358
                          79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.976285IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-46281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0376285IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806485IPR007087Zinc finger, C2H2
SuperFamilySSF576673.03E-5333362No hitNo description
PfamPF139128.0E-9336359IPR007087Zinc finger, C2H2
SMARTSM003550.061336358IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305336363IPR007087Zinc finger, C2H2
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEEQHQRGVL RPLKNTRSRE EEEPTRQKRD HSCYYGLRQN PKKTTHKSFA LESSEPRKKI  60
LFRCGECGKG FRYEKCLSNH QAGMHLSTIQ RVCEESIKSL CGSFSLVRKK KRSRVFRYKK  120
TLFTTFLGSS SVFGESDEEL EVAECLILLS KSSPKDVVNG KKLVGEATDV TPERLNGYLR  180
SKKVRKAAEF EYGFLSNEQK LLEEGDSNEI DQQLVGEAME AVPETIHGYL RGKKLRKGGE  240
FEYGFLSNEH KLLEERVSTL EAPKEPASFL GGSSEIDQQK QRRACGFDSV ISGYETWKEA  300
ASFLGDKFEL GVGAFECSDS DDEIVTESSG KGNAEHQCRL CSKVFSSYQA LGGHQTSHRM  360
SRSKSKKSCR EESVELDDDA AQV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140457001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325390.0AC232539.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH003M07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013723090.10.0uncharacterized protein LOC106426905
RefseqXP_013738740.10.0uncharacterized protein LOC106441475
TrEMBLA0A3P6AQI60.0A0A3P6AQI6_BRAOL; Uncharacterized protein
STRINGBra006302.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.12e-99C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]