PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140467001
Common NameGSBRNA2T00140467001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 186aa    MW: 20509.9 Da    PI: 8.7888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140467001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000315577123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C+ C k Fs++  L  H++ H
  GSBRNA2T00140467001 55 FGCNFCEKEFSTSQALGGHQNAH 77
                         56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.9E-75282No hitNo description
Gene3DG3DSA:3.30.160.603.3E-55381IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-55479IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4895582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MELNLTTSCS SSSISSSPHE MGFSTDTKGK MEEKIAVGPA NEAEGTKKEG KAKVFGCNFC  60
EKEFSTSQAL GGHQNAHKQE RSLAKRRKEK EMNYHGLSLC SQYPASGDFF SSSNSSQYGL  120
GVRYNPNIGK SKAYPFNILR CRLGYREHNI NSHISLPSHL LCQNTDVFSK NLISNLEGSI  180
YMNQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140467001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893620.0AC189362.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB045I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628124.12e-97PREDICTED: zinc finger protein 1-like
RefseqXP_013648797.12e-97zinc finger protein 1-like
TrEMBLA0A0D3EFA11e-133A0A0D3EFA1_BRAOL; Uncharacterized protein
STRINGBo9g164010.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-47C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]