PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00140705001
Common NameGSBRNA2T00140705001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 281aa    MW: 31218.8 Da    PI: 6.9169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00140705001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-172170255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  +Aa a+++a+ kl+g
  GSBRNA2T00140705001 21 TFRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSVQAAMAYDEAAMKLYG 70
                         69****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.35E-282076No hitNo description
SuperFamilySSF541716.15E-202177IPR016177DNA-binding domain
PROSITE profilePS5103220.7322178IPR001471AP2/ERF domain
SMARTSM003802.1E-332184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-292177IPR001471AP2/ERF domain
PRINTSPR003673.9E-92233IPR001471AP2/ERF domain
PfamPF008479.3E-132270IPR001471AP2/ERF domain
PRINTSPR003673.9E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRSRKGCMK GKGGPENATC TFRGVRQRTW GKWVAEIREP NRGTRLWLGT FNTSVQAAMA  60
YDEAAMKLYG PEARLNLLQP QQKQKQEVKR NLSFSDHGSG SWSYKLDTIR GLDLGLGPSN  120
GSRGSWSGSF SIPREDDHHN VSWLLPKRSS SQDQESVNDA SGLAFSNKMQ PRNLMMTPKN  180
GSSNGVWSRF LVGQEKKTEY DVSSSCGSSD NKESILVPSG SGGEGMSRPE VEVEVGTGYL  240
EMDDLLEIDD LGLLIGKDGD FKNWCCDEFQ HPWNWFSERF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-152277359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00140705001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627800.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-140DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A3P5ZTY10.0A0A3P5ZTY1_BRACM; Uncharacterized protein
TrEMBLA0A3P6A0970.0A0A3P6A097_BRAOL; Uncharacterized protein
STRINGBo3g013160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-119ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]