PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141192001
Common NameGSBRNA2T00141192001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 244aa    MW: 28430.7 Da    PI: 8.1377
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141192001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.3e-3240145199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k ltpsdv+k++rlv+pk++ae++           e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+++F+
  GSBRNA2T00141192001  40 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaADAMEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVILFH 129
                          99*****************************99555568889************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                          +++ ++++++++++r+
  GSBRNA2T00141192001 130 RHRVDGGRFFIGWRRR 145
                          87779*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-4034153IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-3037145IPR015300DNA-binding pseudobarrel domain
CDDcd100178.58E-2739144No hitNo description
PROSITE profilePS5086314.14240146IPR003340B3 DNA binding domain
PfamPF023621.4E-2940145IPR003340B3 DNA binding domain
SMARTSM010199.5E-2440146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSINQYSSDF NYHHSLMWQQ QQHPHHHHQN NVVEEKEALF EKPLTPSDVG KLNRLVIPKQ  60
HAERYFPLAA AAADAMEKGL LLCFEDEEGK PWRFRYSYWN SSQSYVLTKG WSRYVKEKQL  120
DAGDVILFHR HRVDGGRFFI GWRRRGNSSS SSDSYRHLQS DASLQYYPHA GAQAVESQRG  180
NSKTLRLFGV NMECQLDSHL SDPSTPDGST LCPTSHDQFH LYPQQHYPPP YYMVRFNIVY  240
YFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-49331451113B3 domain-containing transcription factor NGA1
5os9_B8e-49331451113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141192001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325750.0AC232575.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS010A05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752308.11e-160B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-135Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A3N6PSM41e-157A0A3N6PSM4_BRACR; Uncharacterized protein
STRINGBo4g035110.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-115B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]