PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141249001
Common NameGSBRNA2T00141249001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 460aa    MW: 49871.2 Da    PI: 6.5255
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141249001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.41.4e-22352414163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          ++e+kr++rkq+NRe+ArrsR+RK+ae++eL+++++ L +eN +L+ e+++lk ++++l+se+
  GSBRNA2T00141249001 352 DREIKRQKRKQSNRESARRSRLRKQAECDELAQRAELLNEENASLRAEINRLKSQCDELTSEN 414
                          689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.8E-2868165IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.3E-39205321No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-17345411No hitNo description
SMARTSM003388.7E-22352416IPR004827Basic-leucine zipper domain
PfamPF001703.4E-20353414IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093354417IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.88E-11355411No hitNo description
CDDcd147024.24E-23357408No hitNo description
PROSITE patternPS000360359374IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MERNRSRRYV VFAAVRESEE KRFTAVREIE EERFLSFFSL LDSHRIPSFV LRVFRHHPVV  60
RYLSLVIMAS NEMEKSSKEK EPTTPPPPPS SQEPSSAVSA GMATPDWSGF QAYSPMPPHG  120
FVASSPQPHP YMWGVQHMIP PYGTPPHPYV AMYPPGGMYG HPSMPPGSYP YSPYAMPSPN  180
GMTEASGNTT GGTEGGDAKQ SEVKEKLPIK RSRGSLGSLN MITGKNNEPG KNSGASANGA  240
YSKSGESASD GSSEGSDANS QNGSGSGQEG KDENGDSANA PRNGTPVSQT VPIMPMPAAG  300
PPTNLNIGME YWGAPTSAAI PGMHGKASTP VPGVAAPVSR DGGHSQPWLQ DDREIKRQKR  360
KQSNRESARR SRLRKQAECD ELAQRAELLN EENASLRAEI NRLKSQCDEL TSENTSLKDQ  420
LLSFPSLEAI NMDKDDQEPE AYQTGVTERK VDDTYKNST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368374RRSRLRK
2368375RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.225460.0seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141249001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0220550.0BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022571505.10.0bZIP transcription factor 16-like
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A3P6BWU70.0A0A3P6BWU7_BRAOL; Uncharacterized protein
STRINGBo4g038560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]