PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141258001
Common NameGSBRNA2T00141258001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 245aa    MW: 26739.7 Da    PI: 8.2226
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141258001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.4e-077398126
                         --S---SGGGGTS--TTTT.T-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGd.rCkFaHg 26
                         +kt+lC++f++ G C+y + +C+FaH+
  GSBRNA2T00141258001 73 FKTKLCCNFRA-GSCPYVAsTCHFAHS 98
                         69*********.*****9637*****7 PP
2zf-CCCH39.11.3e-12142167126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+ C+ +  +G+C++G +C+FaHg
  GSBRNA2T00141258001 142 WKTRMCNKWEMSGYCPFGTNCRFAHG 167
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-1370105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-571104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.98672100IPR000571Zinc finger, CCCH-type
SMARTSM003560.0197299IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-47398IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-17138171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-10140172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432141169IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-7141168IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8142167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSHRRDSTTD AVHVIPTNDP PPENPFPSPV WAATEDDYSR VSALNTEETE SPWKKARGSP  60
SSSSSSEIGK AFFKTKLCCN FRAGSCPYVA STCHFAHSAE ELRRPTAGEK SCTFLHDEAS  120
RNREGFAVSL GHRAGPAASP NWKTRMCNKW EMSGYCPFGT NCRFAHGASE LHRFGGGLVE  180
EEEVKIGTSS TLDTKKTGQA SLASPGVRTS NAVTQKPNGV RVVRKWKGPD RISRVYGDWI  240
DDIE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.297761e-33flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141258001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9535561e-120EU953556.1 Zea mays clone 1434304 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022556126.11e-148zinc finger CCCH domain-containing protein 28
SwissprotQ5PP651e-103C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A0D3BRW71e-142A0A0D3BRW7_BRAOL; Uncharacterized protein
STRINGBo4g038870.11e-143(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.18e-95C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]