PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00141573001
Common NameGSBRNA2T00141573001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 153aa    MW: 17631.2 Da    PI: 6.5169
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00141573001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM331.7e-101613610128
                  NAM  10 tdeelvveyLkkkvegkkleleevikev..diykvePwdLpkkvka..eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 
                          +d+e++  +L++k+eg+ + +   i e+  ++y+ ePw Lp++++   + +ew +  k +++       n  + ++g W   g+   + s
  GSBRNA2T00141573001  16 SDSEIIEGFLRPKIEGEAVAIPGLIVELgeELYTREPWLLPQTAHPilNPREWLYLGKPNRN-------NFpVDHEGCWVRIGSAILIRS 98 
                          699***************9998889998778**********533323466788777766553.......3336789********999999 PP

                  NAM  95 k.kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                          + ++e +g    + +    kg+++  + ++W+m+eyrl
  GSBRNA2T00141573001  99 EeTDEIIGGTSRFRYRfrnKGDKHALRWSNWFMKEYRL 136
                          756667898888888777778999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.6627152IPR003441NAC domain
SuperFamilySSF1019415.89E-1816149IPR003441NAC domain
PfamPF023656.8E-616136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MTTRMAGFGE EESGISDSEI IEGFLRPKIE GEAVAIPGLI VELGEELYTR EPWLLPQTAH  60
PILNPREWLY LGKPNRNNFP VDHEGCWVRI GSAILIRSEE TDEIIGGTSR FRYRFRNKGD  120
KHALRWSNWF MKEYRLFNPT PHVICKITEK LC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.59560.0microspore| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00141573001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454870.11e-106PREDICTED: uncharacterized protein LOC108826005
TrEMBLA0A3P6ANR71e-108A0A3P6ANR7_BRAOL; Uncharacterized protein
STRINGBra025701.1-P1e-101(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154271117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64100.26e-42pentatricopeptide (PPR) repeat-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]