PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00141953001

Common Name

GSBRNA2T00141953001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HSF

Protein Properties

Length: 147aa MW: 17158 Da PI: 10.5451

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00141953001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	50.3	6.4e-16	15	113	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.X CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.F 86 F k +y +++d++l+ ++sws+n++sf+++d+ ef+++vLp+ + nf+ F+ L+ YgF +vk ++++ + h++ F GSBRNA2T00141953001 15 FYKGVYAVVDDSSLDAVVSWSKNKKSFIIWDPIEFQRRVLPTgrerRIRSLNFSMFMADLKYYGFIRVKGSKHR-------YHIGHPKyF 97 88899*********************************86555589999****************988.......778888879 PP XXXXXXXXXXXXXXXX CS HSF_DNA-bind 87 kkgkkellekikrkks 102 +gk el++k++ +++ GSBRNA2T00141953001 98 VRGKPELMKKMQEEAH 113 ********998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.45E-16	11	109	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.0E-11	11	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.1E-18	13	109	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.5E-17	15	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MHVPVTVTDY SLSSFYKGVY AVVDDSSLDA VVSWSKNKKS FIIWDPIEFQ RRVLPTGRER 60 RIRSLNFSMF MADLKYYGFI RVKGSKHRYH IGHPKYFVRG KPELMKKMQE EAHEKRMHKF 120 DQDRAMRKKA KARALELADT LGDLGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00141953001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241146	1e-124	AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013744498.1	1e-103	heat stress transcription factor A-4a-like
TrEMBL	A0A3P5ZH52	1e-104	A0A3P5ZH52_BRACM; Uncharacterized protein
STRING	Bra022949.1-P	1e-101	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18172	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77570.1	5e-12	Winged helix-turn-helix transcription repressor DNA-binding

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]