PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142053001

Common Name

GSBRNA2T00142053001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 215aa MW: 23643.5 Da PI: 8.2159

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142053001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00029	13	53	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R d++ ++ + L++l+ + +K + a++L ++++YI+ Lq GSBRNA2T00142053001 13 KERKDKVGERVSALQQLVSPY-----GKTDTASVLLETMQYIQFLQ 53 567788888889999999998.....9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.598	3	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.0E-9	3	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-11	9	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.78E-5	13	57	No hit	No description
Hamap	MF_03058	21.128	110	196	IPR019013	Vacuolar ATPase assembly integral membrane protein Vma21
Pfam	PF09446	1.3E-17	113	174	IPR019013	Vacuolar ATPase assembly integral membrane protein Vma21

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0070072	Biological Process	vacuolar proton-transporting V-type ATPase complex assembly
GO:0016021	Cellular Component	integral component of membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MKRHKSDSSF SSKERKDKVG ERVSALQQLV SPYGKTDTAS VLLETMQYIQ FLQEQVKVLS 60 APYLQTSPTI TQEEMVDHSL RSRGLCLVPM EYTLGVAQSN GADIWAPINM AGVMQKFLVA 120 SMFMWMLPIA ILYAFNHDFL PGSTTLSPHS LTLLSGFLAV VSVNVVIVFY ICLALKEPTD 180 KHKPDASFVA EAKDSVKKLT SGVPSTDPAL KKQE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.9029	1e-177	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142053001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189463	1e-120	AC189463.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB074K06, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009132812.1	9e-74	PREDICTED: transcription factor bHLH113-like
Refseq	XP_009132813.1	9e-74	PREDICTED: transcription factor bHLH113-like
Swissprot	Q7XJU2	4e-60	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A3P6A5H1	1e-156	A0A3P6A5H1_BRACM; Vacuolar ATPase assembly integral membrane protein VMA21 homolog
TrEMBL	M4E263	1e-156	M4E263_BRARP; Vacuolar ATPase assembly integral membrane protein VMA21 homolog
STRING	Bra022863.1-P	1e-157	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	2e-62	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]