PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142063001
Common NameGSBRNA2T00142063001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 386aa    MW: 43642.9 Da    PI: 9.5409
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142063001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.11.2e-1614961198
                         HHTT-EE--HHH.HTT.---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 11 lksgrlvlpkkfaeeh.ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         + s+ l++p  f+++h +g + +++t +l++   s ++Wevk   + ++ r  lt+GWkeF+ a++L++gD+++F+ +++++f  +v++f 
  GSBRNA2T00142063001 14 FHSH-LTIPVAFFSKHiQGRNDQKTTAKLTSdaASEKTWEVKT--EDGR-R--LTDGWKEFALAHDLRVGDILIFRQEKDMSF--HVTLFG 96
                         4555.************4455566667766644788*******..4444.3..9**********************7777777..998885 PP
2B3703.2e-22144226894
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                          +++l+ + l lp +f++++g++++++ +++l++e+grsW++ l+ +++ gr ++t+GW++F +angLk+gDf+++kl++r ++  +v
  GSBRNA2T00142063001 144 PSTLRYDSLNLPVSFVRANGLETRCG-DIVLMNEKGRSWTLSLK-QRQCGRSYITRGWRSFFSANGLKAGDFFTLKLIKRGGT--LV 226
                          67788899*************99887.****************5.666666789************************96554..34 PP
3B3604.1e-19288382199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k ++++++  ++ l lpk+f++ hg+    +++++l d++g +W+ kl  r  ++r+ +++GWk+F kan +k+g++v +kl++++++
  GSBRNA2T00142063001 288 FVKLTLKPYNVIKCVLFLPKPFTDLHGIT--VGTKMSLLDKQGVKWSTKL--RSEGKRIRMAGGWKDFFKANCVKTGESVKLKLIWEEDT 373
                          8899999****************999876..4569***************..99999999****************************** PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          ++v+k+++k
  GSBRNA2T00142063001 374 SCVLKFCSK 382
                          ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.802398IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-194105IPR015300DNA-binding pseudobarrel domain
CDDcd100172.76E-16495No hitNo description
SMARTSM010193.4E-19698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-246110IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-121595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-23131230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-20133229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.397137232IPR003340B3 DNA binding domain
CDDcd100178.52E-21137228No hitNo description
SMARTSM010192.8E-26138233IPR003340B3 DNA binding domain
PfamPF023629.8E-21142226IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18280382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-19282381IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-15287380No hitNo description
SMARTSM010191.5E-24288383IPR003340B3 DNA binding domain
PfamPF023623.5E-17288382IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155288382IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAKKHFFQPL LPGFHSHLTI PVAFFSKHIQ GRNDQKTTAK LTSDAASEKT WEVKTEDGRR  60
LTDGWKEFAL AHDLRVGDIL IFRQEKDMSF HVTLFGPSCC EIQYDSCLDD KNNIGKINSK  120
KNNPKREEEC SSSDPSCFLA NVMPSTLRYD SLNLPVSFVR ANGLETRCGD IVLMNEKGRS  180
WTLSLKQRQC GRSYITRGWR SFFSANGLKA GDFFTLKLIK RGGTLVLLHK SPSHRESKEN  240
EGSEADDEIE SLSTESDSDE ESNQDEKSFI KRRISIWKAS SSPSQNSFVK LTLKPYNVIK  300
CVLFLPKPFT DLHGITVGTK MSLLDKQGVK WSTKLRSEGK RIRMAGGWKD FFKANCVKTG  360
ESVKLKLIWE EDTSCVLKFC SKVKP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292691e-171leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142063001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894330.0AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734122.10.0putative B3 domain-containing protein REM15 isoform X1
SwissprotO230761e-108REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A3P5ZYD80.0A0A3P5ZYD8_BRACM; Uncharacterized protein
STRINGBo3g025330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-98B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]