PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142208001
Common NameGSBRNA2T00142208001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 298aa    MW: 32600.4 Da    PI: 7.6207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142208001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-09157204455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++ +L+ l+P +    +k   Ka +L + ++Y++sLq
  GSBRNA2T00142208001 157 SHSLAERARREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQSLQ 204
                          8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17151218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-10151208No hitNo description
Gene3DG3DSA:4.10.280.104.8E-17153215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.707153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-7157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MASFSYFQHY PHSLLDPLLF SSPNSSTKLS GFIDQNPLYP PPNISTIVDT SLNPFLDSFN  60
VEKTESSDVK KQINTNATAA LTGDQLSPGP STTSAGKKQR RKTRNGSKSK EGVEGRKSKK  120
PRNGSISTDV EVKRASEQEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMRTLQNLV  180
PGCDKVTGKA LMLDEIINYV QSLQNQVEFL SMKLASISPV VYDFGSDLDG IIVRPEMGSA  240
DVGTSFANAM PTTTTNFSSL LDDSILPAEA HLQEDGGERE KTVDRSGFNN NSFCSFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.282910.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142208001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132684.10.0PREDICTED: transcription factor bHLH137
SwissprotQ93W881e-143BH137_ARATH; Transcription factor bHLH137
TrEMBLM4E1V30.0M4E1V3_BRARP; Uncharacterized protein
STRINGBra022753.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-137bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]