PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142401001

Common Name

GSBRNA2T00142401001, LOC106401739

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 249aa MW: 27576.1 Da PI: 5.0768

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142401001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.8	2e-11	70	112	2	48
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 + GVr + +g+W+AeIr p + +++++lg++ t eeA ka+ GSBRNA2T00142401001 70 KPVGVRLRQ-SGKWAAEIRNPLT---KTKVWLGTYATLEEAGKAYAD 112 678*999.7*****743...4***************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	15.356	70	127	IPR001471	AP2/ERF domain
Pfam	PF00847	4.6E-7	70	110	IPR001471	AP2/ERF domain
SMART	SM00380	5.2E-10	70	133	IPR001471	AP2/ERF domain
CDD	cd00018	1.12E-15	72	110	No hit	No description
SuperFamily	SSF54171	4.18E-12	72	121	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	4.8E-16	73	125	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MKKSVRGRKV RIIVSDPYAT DDSSSDEWFE CKPPKVKRIV HEINLPFQLS ESSQYHKSCR 60 RKAASMQLNK PVGVRLRQSG KWAAEIRNPL TKTKVWLGTY ATLEEAGKAY ADKKVEFDAS 120 VASANSQCLR SAASKEKVCL SKDVAASGDL TKEGFDLSQL EIPDLSFLAA EEKSGAKAAG 180 EIDFDCFFKD EDYDHLFDDF SVVDNVNNIS LPSELPDCDF TDVELEHGDM KFAFADQLAH 240 PPLNIACP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11194	0.0	microspore

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142401001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013586951.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF116
Refseq	XP_013586952.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF116
Refseq	XP_013697768.1	0.0	ethylene-responsive transcription factor ERF116
Refseq	XP_013697769.1	0.0	ethylene-responsive transcription factor ERF116
Refseq	XP_013697770.1	0.0	ethylene-responsive transcription factor ERF116
Swissprot	Q8GW17	4e-64	EF116_ARATH; Ethylene-responsive transcription factor ERF116
TrEMBL	A0A0D3CD68	0.0	A0A0D3CD68_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6RPG1	0.0	A0A3N6RPG1_BRACR; Uncharacterized protein
STRING	Bo5g043190.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15119	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25470.2	2e-60	ERF family protein

Link Out ? help Back to Top
Entrez Gene	106401739

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]