PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142466001

Common Name

GSBRNA2T00142466001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 319aa MW: 34570.2 Da PI: 9.3189

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142466001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	5	27	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ +L Hir H GSBRNA2T00142466001 5 FVCKFCNKKFPSGKSLGGHIRIH 27 89*******************99 PP
2	zf-C2H2	11.2	0.0012	267	289	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k++s+ L H r+H GSBRNA2T00142466001 267 HECPICFKVYSSGQALGGHKRSH 289 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-5	2	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.23E-8	3	27	No hit	No description
Pfam	PF13912	4.4E-6	5	25	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.845	5	32	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0065	5	27	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	7	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.23E-8	262	289	No hit	No description
Pfam	PF13912	2.7E-10	267	289	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.43	267	289	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.141	267	294	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	269	289	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MEKEFVCKFC NKKFPSGKSL GGHIRIHSPR SSVHSDSFIG KNNNSKKRLV DQRALASHMD 60 CHNYEGKKMG TQSASETTTS SGPTMIKRSK KQSSSESFST VSWSSDPGID QGSKDLMFLH 120 LGRKDYNFNS LVPESSENNS EILETKTSSG ELLKTPHKVA VVDDSDDGSS DSDYFMNGPK 180 KSDSDVSVGG SLRNTGFGSG FNSFKNGDDL GVKEGGSKHE LGKSKRVSPF YESDSSADTN 240 NKFHRSSDVK SPMVKKASGG VKNSKGHECP ICFKVYSSGQ ALGGHKRSHT IANQAQRAKR 300 KAADMQFDLN LPAEDTDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142466001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189429	0.0	AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013694746.1	0.0	zinc finger protein ZAT9-like
TrEMBL	A0A0D3CD23	0.0	A0A0D3CD23_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EGN9	0.0	A0A3P6EGN9_BRAOL; Uncharacterized protein
STRING	Bo5g042740.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20351	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	7e-62	C2H2-like zinc finger protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]