PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142469001
Common NameGSBRNA2T00142469001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 649aa    MW: 73059.6 Da    PI: 9.5585
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142469001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011590612123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00142469001 590 HECPICFRVFKSGQALGGHKRSH 612
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.310.508.7E-5117149IPR005843Alpha-D-phosphohexomutase, C-terminal
SuperFamilySSF576673.98E-6207237No hitNo description
Gene3DG3DSA:3.30.160.603.5E-5208234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.32211233IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-4211234IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.762211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
SMARTSM003550.071291313IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783291318IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-6292313No hitNo description
Gene3DG3DSA:3.30.160.608.8E-4293315IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
PfamPF139120.0022293315IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-6585612No hitNo description
SMARTSM003550.14590612IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-10590612IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974590612IPR007087Zinc finger, C2H2
PROSITE patternPS000280592612IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0071704Biological Processorganic substance metabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0016868Molecular Functionintramolecular transferase activity, phosphotransferases
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MRHHRGGADE IFSHGAMIAR RSNRRSLTTR PNPCRQRRLA STPAMFSCTL TEDESFLCPA  60
DGAIMITCIL IDLGFYNKYS KPSSLQQEQS AAVDSSGREF NRNRLIALLS AIVLEQIRVS  120
GFGGWFLLRL SLHDPVLPLN IETNTMRVML SLFLKHNPPR LWSRSQVNKR GLLHSPKPDL  180
CQKVSSFELD DLQFTVVFQD LRMEQFKERK FVCKFCSKRF ACGKSLGGHI RTHMNKENSA  240
DSDEDEHNKL RIDENGGQAS YGLRENPKKN KKFVVHRDMI ALKHQHQQQL LYCRECGKGF  300
TSSKALCGHM ACHSEREKIL MDGQSDTEAS SSPIRRRSKR AVKHHHNHKA DAFVDGDSIM  360
DQSDSSASEI EPEQEETALS LMMLSRDSSF KKVRNLVVNS LAESSDNNSV ILETKSSSGE  420
QLKILHVKNV EEFCKKDKLG GVDNGDVLYD SDNSDSGYFR NGPKKLDSDV SVDGFLKNNA  480
SSNKSAMGFN SYTPKKEKSL NRFRNEWSGS GSGRSSTKYD LRQSKRGFPC YGRKKIKYEF  540
TESVYDSGDQ LSLETDSCAD TNRSIKKIHN SKPPMVKKVS GGAKKKSKGH ECPICFRVFK  600
SGQALGGHKR SHFIGSQDHR TLVIQHHHQV AHDMHTLIDL NLPAPIDE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.296725e-44flower| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142469001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584457.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013584458.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013584459.10.0PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013695610.10.0zinc finger protein ZAT4-like
TrEMBLA0A0D3CD210.0A0A0D3CD21_BRAOL; Uncharacterized protein
STRINGBo5g042720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]