PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142485001
Common NameGSBRNA2T00142485001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 553aa    MW: 62151.2 Da    PI: 8.1891
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142485001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.3e-12291081297
                          HTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  12 ksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           ++ l +p  f+ +h    +  +   kt +l++  s ++W vk+  ++      lt+GW++F+  ++L+ gD+ +F+++g++ f  +v++
  GSBRNA2T00142485001  29 HTH-LNIPVAFFLKHvqglS--NDHIKTAKLTTdASTKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTA 107
                          444.99**********9552..444456666554999*******..555....5***********************9998888..8877 PP

                          E CS
                   B3  97 f 97 
                          f
  GSBRNA2T00142485001 108 F 108
                          6 PP

2B364.71.4e-20174268599
                          -..-HHHHTT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           +++++l+s+rl++p  fa+++g+++  +++ ++l +e+grsW+++++y+k + +++ + GW++F+ +ng+k g   +Fkl++ +++ +v
  GSBRNA2T00142485001 174 HVSPSSLSSDRLYIPTGFARSNGLNNMsGKQIIVLLNEEGRSWNLNMTYNKVGMQTFVRPGWRRFCAENGMKKGHQYTFKLVR-KSAPPV 262
                          567899999*************666551445688999*******************************************998.888899 PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          +++ r+
  GSBRNA2T00142485001 263 IRLSRA 268
                          998876 PP

3B360.33.4e-19289380699
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++s++l+++ l+l ++f++++g++k  s ++tl++e+g sW + l+++   ++++l+ GWk F++ang+k+ D++++kl+g ++ ++v+ 
  GSBRNA2T00142485001 289 VSSNSLTTDKLYLQRQFVTTNGLEKGLS-EITLKNEWGGSWILGLRHCEPHNHTYLGPGWKTFCQANGIKAEDSFMLKLVG-TGDTPVLL 376
                          67899999***************99887.****************99999999***************************9.66668888 PP

                          EE-S CS
                   B3  96 vfrk 99 
                          ++++
  GSBRNA2T00142485001 377 LCSS 380
                          8875 PP

4B350.53.8e-16454550298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                          +  +++ ++lk++ l+lp  f++ +g++k  +++++l  ++g ++  v l  +k+sg++ ++kGW+eF++a+g+k+g+++ ++l ++ +e
  GSBRNA2T00142485001 454 VRLTLTQSALKTSVLYLPLAFTRMNGINK--PRKIMLLGKDGvKKQVVDLLKNKSSGTMRIGKGWREFCDAHGVKVGESFQLELFREdEE 541
                          55667889999999************996..558********7777777877999999*************************9987688 PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                            +v+k++ 
  GSBRNA2T00142485001 542 SIPVLKFCT 550
                          888888875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.24E-1814118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2014113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.68717111IPR003340B3 DNA binding domain
CDDcd100171.33E-1218108No hitNo description
SMARTSM010191.6E-1720111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-20163263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-18166266IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.706170269IPR003340B3 DNA binding domain
CDDcd100173.51E-17171267No hitNo description
SMARTSM010199.5E-26171269IPR003340B3 DNA binding domain
PfamPF023624.6E-19173268IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-17279380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-16283381IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.493284380IPR003340B3 DNA binding domain
SMARTSM010193.9E-20285381IPR003340B3 DNA binding domain
PfamPF023625.3E-18289380IPR003340B3 DNA binding domain
CDDcd100175.86E-13290379No hitNo description
SuperFamilySSF1019369.81E-18449549IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-15449550IPR015300DNA-binding pseudobarrel domain
CDDcd100172.82E-14451541No hitNo description
PROSITE profilePS5086312.21453551IPR003340B3 DNA binding domain
SMARTSM010191.8E-23453552IPR003340B3 DNA binding domain
PfamPF023629.3E-15453549IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MKCSRMAYDQ SLHSPNNPHF FQPLLPGFHT HLNIPVAFFL KHVQGLSNDH IKTAKLTTDA  60
STKTWLVKVD GVRLTDGWED FAVGHDLRIG DITIFRHEGE MVFHVTAFGP SCCDIQYTSA  120
SSHNISDDSQ DQTNNTDFFF NCTGNSSGER RKRVKKNPRT KEDSSSDHSQ FVAHVSPSSL  180
SSDRLYIPTG FARSNGLNNM SGKQIIVLLN EEGRSWNLNM TYNKVGMQTF VRPGWRRFCA  240
ENGMKKGHQY TFKLVRKSAP PVIRLSRAEH ESKLAPESSL HHSYFMGSVS SNSLTTDKLY  300
LQRQFVTTNG LEKGLSEITL KNEWGGSWIL GLRHCEPHNH TYLGPGWKTF CQANGIKAED  360
SFMLKLVGTG DTPVLLLCSS NRGKTPLECS EDRDDVNSVS SDTSCEDDSK EESQESDKES  420
IEDEDSSRQC IVMEKEKNSL RCICSSPYSK HRFVRLTLTQ SALKTSVLYL PLAFTRMNGI  480
NKPRKIMLLG KDGVKKQVVD LLKNKSSGTM RIGKGWREFC DAHGVKVGES FQLELFREDE  540
ESIPVLKFCT TT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142485001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639399.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-153REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A3P6EUS30.0A0A3P6EUS3_BRAOL; Uncharacterized protein
STRINGBo5g044960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-151B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]