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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSBRNA2T00142485001 | ||||||||
| Common Name | GSBRNA2T00142485001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | B3 | ||||||||
| Protein Properties | Length: 553aa MW: 62151.2 Da PI: 8.1891 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 38.3 | 2.3e-12 | 29 | 108 | 12 | 97 |
HTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 12 ksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
++ l +p f+ +h + + kt +l++ s ++W vk+ ++ lt+GW++F+ ++L+ gD+ +F+++g++ f +v++
GSBRNA2T00142485001 29 HTH-LNIPVAFFLKHvqglS--NDHIKTAKLTTdASTKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTA 107
444.99**********9552..444456666554999*******..555....5***********************9998888..8877 PP
E CS
B3 97 f 97
f
GSBRNA2T00142485001 108 F 108
6 PP
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| 2 | B3 | 64.7 | 1.4e-20 | 174 | 268 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
+++++l+s+rl++p fa+++g+++ +++ ++l +e+grsW+++++y+k + +++ + GW++F+ +ng+k g +Fkl++ +++ +v
GSBRNA2T00142485001 174 HVSPSSLSSDRLYIPTGFARSNGLNNMsGKQIIVLLNEEGRSWNLNMTYNKVGMQTFVRPGWRRFCAENGMKKGHQYTFKLVR-KSAPPV 262
567899999*************666551445688999*******************************************998.888899 PP
EEEE-S CS
B3 94 vkvfrk 99
+++ r+
GSBRNA2T00142485001 263 IRLSRA 268
998876 PP
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| 3 | B3 | 60.3 | 3.4e-19 | 289 | 380 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
++s++l+++ l+l ++f++++g++k s ++tl++e+g sW + l+++ ++++l+ GWk F++ang+k+ D++++kl+g ++ ++v+
GSBRNA2T00142485001 289 VSSNSLTTDKLYLQRQFVTTNGLEKGLS-EITLKNEWGGSWILGLRHCEPHNHTYLGPGWKTFCQANGIKAEDSFMLKLVG-TGDTPVLL 376
67899999***************99887.****************99999999***************************9.66668888 PP
EE-S CS
B3 96 vfrk 99
++++
GSBRNA2T00142485001 377 LCSS 380
8875 PP
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| 4 | B3 | 50.5 | 3.8e-16 | 454 | 550 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
+ +++ ++lk++ l+lp f++ +g++k +++++l ++g ++ v l +k+sg++ ++kGW+eF++a+g+k+g+++ ++l ++ +e
GSBRNA2T00142485001 454 VRLTLTQSALKTSVLYLPLAFTRMNGINK--PRKIMLLGKDGvKKQVVDLLKNKSSGTMRIGKGWREFCDAHGVKVGESFQLELFREdEE 541
55667889999999************996..558********7777777877999999*************************9987688 PP
E..EEEEE- CS
B3 90 felvvkvfr 98
+v+k++
GSBRNA2T00142485001 542 SIPVLKFCT 550
888888875 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.24E-18 | 14 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.2E-20 | 14 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 10.687 | 17 | 111 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.33E-12 | 18 | 108 | No hit | No description |
| SMART | SM01019 | 1.6E-17 | 20 | 111 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 163 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.71E-18 | 166 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 14.706 | 170 | 269 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 3.51E-17 | 171 | 267 | No hit | No description |
| SMART | SM01019 | 9.5E-26 | 171 | 269 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 4.6E-19 | 173 | 268 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 2.4E-17 | 279 | 380 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 7.26E-16 | 283 | 381 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 13.493 | 284 | 380 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 3.9E-20 | 285 | 381 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 5.3E-18 | 289 | 380 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 5.86E-13 | 290 | 379 | No hit | No description |
| SuperFamily | SSF101936 | 9.81E-18 | 449 | 549 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 2.5E-15 | 449 | 550 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 2.82E-14 | 451 | 541 | No hit | No description |
| PROSITE profile | PS50863 | 12.21 | 453 | 551 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.8E-23 | 453 | 552 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 9.3E-15 | 453 | 549 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 553 aa Download sequence Send to blast |
MKCSRMAYDQ SLHSPNNPHF FQPLLPGFHT HLNIPVAFFL KHVQGLSNDH IKTAKLTTDA 60 STKTWLVKVD GVRLTDGWED FAVGHDLRIG DITIFRHEGE MVFHVTAFGP SCCDIQYTSA 120 SSHNISDDSQ DQTNNTDFFF NCTGNSSGER RKRVKKNPRT KEDSSSDHSQ FVAHVSPSSL 180 SSDRLYIPTG FARSNGLNNM SGKQIIVLLN EEGRSWNLNM TYNKVGMQTF VRPGWRRFCA 240 ENGMKKGHQY TFKLVRKSAP PVIRLSRAEH ESKLAPESSL HHSYFMGSVS SNSLTTDKLY 300 LQRQFVTTNG LEKGLSEITL KNEWGGSWIL GLRHCEPHNH TYLGPGWKTF CQANGIKAED 360 SFMLKLVGTG DTPVLLLCSS NRGKTPLECS EDRDDVNSVS SDTSCEDDSK EESQESDKES 420 IEDEDSSRQC IVMEKEKNSL RCICSSPYSK HRFVRLTLTQ SALKTSVLYL PLAFTRMNGI 480 NKPRKIMLLG KDGVKKQVVD LLKNKSSGTM RIGKGWREFC DAHGVKVGES FQLELFREDE 540 ESIPVLKFCT TT* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | GSBRNA2T00142485001 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_013639399.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like | ||||
| Swissprot | Q84WP3 | 1e-153 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
| TrEMBL | A0A3P6EUS3 | 0.0 | A0A3P6EUS3_BRAOL; Uncharacterized protein | ||||
| STRING | Bo5g044960.1 | 0.0 | (Brassica oleracea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5781 | 16 | 48 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G26680.1 | 1e-151 | B3 family protein | ||||
| Publications ? help Back to Top | |||
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