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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSBRNA2T00142488001 | ||||||||
| Common Name | GSBRNA2T00142488001, LOC106360567 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | B3 | ||||||||
| Protein Properties | Length: 531aa MW: 59674.3 Da PI: 7.6469 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 38.4 | 2.2e-12 | 24 | 103 | 12 | 97 |
HTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 12 ksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
++ l +p f+ +h + + kt +l++ s ++W vk+ ++ lt+GW++F+ ++L+ gD+ +F+++g++ f +v++
GSBRNA2T00142488001 24 HTH-LNIPVAFFLKHvqglS--NDHIKTAKLTTdASTKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTA 102
444.99**********9552..444456666554999*******..555....5***********************9998888..8877 PP
E CS
B3 97 f 97
f
GSBRNA2T00142488001 103 F 103
6 PP
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| 2 | B3 | 59.4 | 6.2e-19 | 163 | 251 | 6 | 95 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
+++++l+ +rl++p +f +++g+++ ++k+++l +++grsW+++++y+k s +++ + GW++F+ +ng+++g +Fkl+g +++ +v++
GSBRNA2T00142488001 163 VSPSSLRFDRLYVPISFSRSNGLDNMSGKEIVLLNQEGRSWNLNITYTKASVQTLVGPGWRRFCAENGMNQGHHYTFKLVG-KSAPPVIR 251
5677788899*********************************************************************99.67667765 PP
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| 3 | B3 | 60.8 | 2.3e-19 | 272 | 361 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
++s++l+++ l++ +kf++e+g+k + +++l++e g +W++ l+y k+ ++++l+ GWk F++ ng+k+gD+++Fk+++ ++ ++v+
GSBRNA2T00142488001 272 VSSNSLRTDKLYIQRKFVNENGLK--GLSEIILKSECGGRWSLGLRYYKSLDHTYLGPGWKTFCQVNGIKTGDSFMFKVVE-TGDKPVLL 358
57899999*************998..4559************************************************887.66667887 PP
EE- CS
B3 96 vfr 98
+++
GSBRNA2T00142488001 359 LCS 361
775 PP
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| 4 | B3 | 51.6 | 1.8e-16 | 430 | 528 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr. 87
f+k ++++ +lk+ l+lp f++ +g++k++ ++tl d++g + +v +++++ + l+kGW+eF++a+g+k+g +++++l+++
GSBRNA2T00142488001 430 FVKLTLTPRALKTYKLMLPLGFTRVNGINKPG--KITLLDKDGVKKQVVDLLDQNRNIgiMRLGKGWREFCDAHGVKVGQSFLLELIWEd 517
889999999******************99766..7********6666665565555445699*************************999 PP
SEE..EEEEE- CS
B3 88 sefelvvkvfr 98
+e+++v+k++
GSBRNA2T00142488001 518 EEANPVLKFCT 528
*******9996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 4.5E-19 | 10 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.94E-17 | 10 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 10.785 | 12 | 106 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.18E-12 | 13 | 103 | No hit | No description |
| SMART | SM01019 | 1.6E-17 | 15 | 106 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 6.9E-19 | 151 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.53E-17 | 152 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 13.916 | 158 | 256 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.89E-13 | 158 | 245 | No hit | No description |
| SMART | SM01019 | 3.9E-20 | 159 | 256 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 6.0E-17 | 163 | 251 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.2E-16 | 265 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 14.41 | 267 | 362 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.1E-20 | 268 | 363 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 5.1E-17 | 271 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 3.4E-17 | 272 | 361 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 8.46E-14 | 273 | 361 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 1.6E-15 | 423 | 528 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.55E-16 | 426 | 527 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 6.65E-14 | 429 | 519 | No hit | No description |
| SMART | SM01019 | 5.2E-22 | 430 | 530 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.448 | 430 | 529 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 7.0E-16 | 430 | 528 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 531 aa Download sequence Send to blast |
MADDQSLRSP ITPHFFQPLL PGFHTHLNIP VAFFLKHVQG LSNDHIKTAK LTTDASTKTW 60 LVKVDGVRLT DGWEDFAVGH DLRIGDITIF RHEGEMVFHV TAFGPSFCDI QYTSASSHNI 120 NDDSQDQTNN TENSSGEKRK RVKKKPRRKE ESSSDHSHFM AHVSPSSLRF DRLYVPISFS 180 RSNGLDNMSG KEIVLLNQEG RSWNLNITYT KASVQTLVGP GWRRFCAENG MNQGHHYTFK 240 LVGKSAPPVI RLSLAEPAPE PSLHHSYYVG SVSSNSLRTD KLYIQRKFVN ENGLKGLSEI 300 ILKSECGGRW SLGLRYYKSL DHTYLGPGWK TFCQVNGIKT GDSFMFKVVE TGDKPVLLLC 360 SYNHGKTPLE CSEESDDVNS LSSDTSSGES QESEEENFED EGSSEESFEM VKRENSSRCR 420 ASSSYSQDRF VKLTLTPRAL KTYKLMLPLG FTRVNGINKP GKITLLDKDG VKKQVVDLLD 480 QNRNIGIMRL GKGWREFCDA HGVKVGQSFL LELIWEDEEA NPVLKFCTKL * |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 136 | 145 | EKRKRVKKKP |
| 2 | 139 | 147 | KRVKKKPRR |
| 3 | 140 | 146 | RVKKKPR |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | GSBRNA2T00142488001 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_013638639.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like | ||||
| Swissprot | Q84WP3 | 1e-149 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
| TrEMBL | A0A0D3CDE8 | 0.0 | A0A0D3CDE8_BRAOL; Uncharacterized protein | ||||
| STRING | Bo5g044980.1 | 0.0 | (Brassica oleracea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM5781 | 16 | 48 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G26680.1 | 1e-137 | B3 family protein | ||||
| Link Out ? help Back to Top | |
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| Entrez Gene | 106360567 |
| Publications ? help Back to Top | |||
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