PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142488001
Common NameGSBRNA2T00142488001, LOC106360567
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 531aa    MW: 59674.3 Da    PI: 7.6469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142488001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-12241031297
                          HTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  12 ksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           ++ l +p  f+ +h    +  +   kt +l++  s ++W vk+  ++      lt+GW++F+  ++L+ gD+ +F+++g++ f  +v++
  GSBRNA2T00142488001  24 HTH-LNIPVAFFLKHvqglS--NDHIKTAKLTTdASTKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTA 102
                          444.99**********9552..444456666554999*******..555....5***********************9998888..8877 PP

                          E CS
                   B3  97 f 97 
                          f
  GSBRNA2T00142488001 103 F 103
                          6 PP

2B359.46.2e-19163251695
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++++l+ +rl++p +f +++g+++ ++k+++l +++grsW+++++y+k s +++ + GW++F+ +ng+++g   +Fkl+g +++ +v++
  GSBRNA2T00142488001 163 VSPSSLRFDRLYVPISFSRSNGLDNMSGKEIVLLNQEGRSWNLNITYTKASVQTLVGPGWRRFCAENGMNQGHHYTFKLVG-KSAPPVIR 251
                          5677788899*********************************************************************99.67667765 PP

3B360.82.3e-19272361698
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          ++s++l+++ l++ +kf++e+g+k  +  +++l++e g +W++ l+y k+ ++++l+ GWk F++ ng+k+gD+++Fk+++ ++ ++v+ 
  GSBRNA2T00142488001 272 VSSNSLRTDKLYIQRKFVNENGLK--GLSEIILKSECGGRWSLGLRYYKSLDHTYLGPGWKTFCQVNGIKTGDSFMFKVVE-TGDKPVLL 358
                          57899999*************998..4559************************************************887.66667887 PP

                          EE- CS
                   B3  96 vfr 98 
                          +++
  GSBRNA2T00142488001 359 LCS 361
                          775 PP

4B351.61.8e-16430528198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr. 87 
                          f+k ++++ +lk+  l+lp  f++ +g++k++  ++tl d++g + +v    +++++   + l+kGW+eF++a+g+k+g +++++l+++ 
  GSBRNA2T00142488001 430 FVKLTLTPRALKTYKLMLPLGFTRVNGINKPG--KITLLDKDGVKKQVVDLLDQNRNIgiMRLGKGWREFCDAHGVKVGQSFLLELIWEd 517
                          889999999******************99766..7********6666665565555445699*************************999 PP

                          SEE..EEEEE- CS
                   B3  88 sefelvvkvfr 98 
                          +e+++v+k++ 
  GSBRNA2T00142488001 518 EEANPVLKFCT 528
                          *******9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-1910108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1710113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.78512106IPR003340B3 DNA binding domain
CDDcd100171.18E-1213103No hitNo description
SMARTSM010191.6E-1715106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-19151250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-17152251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.916158256IPR003340B3 DNA binding domain
CDDcd100171.89E-13158245No hitNo description
SMARTSM010193.9E-20159256IPR003340B3 DNA binding domain
PfamPF023626.0E-17163251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16265360IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.41267362IPR003340B3 DNA binding domain
SMARTSM010191.1E-20268363IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-17271361IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-17272361IPR003340B3 DNA binding domain
CDDcd100178.46E-14273361No hitNo description
Gene3DG3DSA:2.40.330.101.6E-15423528IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-16426527IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-14429519No hitNo description
SMARTSM010195.2E-22430530IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448430529IPR003340B3 DNA binding domain
PfamPF023627.0E-16430528IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MADDQSLRSP ITPHFFQPLL PGFHTHLNIP VAFFLKHVQG LSNDHIKTAK LTTDASTKTW  60
LVKVDGVRLT DGWEDFAVGH DLRIGDITIF RHEGEMVFHV TAFGPSFCDI QYTSASSHNI  120
NDDSQDQTNN TENSSGEKRK RVKKKPRRKE ESSSDHSHFM AHVSPSSLRF DRLYVPISFS  180
RSNGLDNMSG KEIVLLNQEG RSWNLNITYT KASVQTLVGP GWRRFCAENG MNQGHHYTFK  240
LVGKSAPPVI RLSLAEPAPE PSLHHSYYVG SVSSNSLRTD KLYIQRKFVN ENGLKGLSEI  300
ILKSECGGRW SLGLRYYKSL DHTYLGPGWK TFCQVNGIKT GDSFMFKVVE TGDKPVLLLC  360
SYNHGKTPLE CSEESDDVNS LSSDTSSGES QESEEENFED EGSSEESFEM VKRENSSRCR  420
ASSSYSQDRF VKLTLTPRAL KTYKLMLPLG FTRVNGINKP GKITLLDKDG VKKQVVDLLD  480
QNRNIGIMRL GKGWREFCDA HGVKVGQSFL LELIWEDEEA NPVLKFCTKL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136145EKRKRVKKKP
2139147KRVKKKPRR
3140146RVKKKPR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142488001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013638639.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-149REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A0D3CDE80.0A0A0D3CDE8_BRAOL; Uncharacterized protein
STRINGBo5g044980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-137B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]