PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142504001
Common NameGSBRNA2T00142504001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 239aa    MW: 25894.9 Da    PI: 8.3804
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142504001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer42.81.2e-1353842858
          ZF-HD_dimer 28 fmpsegee.gtaaalkCaACgCHRnFHRreve 58
                         f+ps++ + +++++l+C ACgCHRnFHRre +
  GSBRNA2T00142504001 53 FIPSPTFNtSDPTSLTCDACGCHRNFHRREDD 84
                         88999988899******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.6E-95383IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-105382IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.41E-17141206IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-26144205IPR009057Homeodomain-like
TIGRFAMsTIGR015658.9E-25149205IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDVIATSATI VSHLDSQQPV TQAPTRIQPA KPISFSNGKH HHDHQHHASQ VVFIPSPTFN  60
TSDPTSLTCD ACGCHRNFHR REDDLSAVSA AVPRIEFRPH NRHQLPPPPL PPVGVGSQDD  120
DDPASPPPIS SSYMLLALSG GATAAPVSRK RFRTKFSEFQ KGKMFEFAER VGWRMPKADD  180
VDVVEFCREI GVERSVFKVW MHNNKIPGRG GGARRANGDG GGGDGRESVP TNGSFTST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-201502081876ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.145990.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142504001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121598.11e-132PREDICTED: zinc-finger homeodomain protein 8
RefseqXP_013667736.11e-132zinc-finger homeodomain protein 8-like
SwissprotQ9LXG01e-102ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A397XR591e-143A0A397XR59_BRACM; Uncharacterized protein
STRINGBra008712.1-P1e-132(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-88homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]