PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00142876001
Common NameGSBRNA2T00142876001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 83aa    MW: 9812.15 Da    PI: 10.5802
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00142876001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.5e-1120561047
                         HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +l ++v+ +G+ +W+ Ia++m+ gRt+k+ ++rw++ 
  GSBRNA2T00142876001 20 SQLMELVTVYGPQNWNHIAEKMQ-GRTGKSRRLRWFNQ 56
                         6899*******************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.737161IPR017930Myb domain
CDDcd001672.74E-61955No hitNo description
Gene3DG3DSA:1.10.10.604.8E-202075IPR009057Homeodomain-like
PfamPF139211.0E-92174No hitNo description
SuperFamilySSF466893.26E-132179IPR009057Homeodomain-like
PROSITE profilePS500904.3685882IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MNQRRSREVL GFVVEDIGES QLMELVTVYG PQNWNHIAEK MQGRTGKSRR LRWFNQLDPR  60
INKRAFSPEE EERLLAAHRA FW*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00142876001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727325e-54AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593005.19e-38PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB44
SwissprotQ9SEZ41e-27MY105_ARATH; Transcription factor MYB105
TrEMBLA0A0D3DBG29e-54A0A0D3DBG2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E3Q39e-54A0A3P6E3Q3_BRAOL; Uncharacterized protein
STRINGBo7g087170.12e-54(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.11e-34myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]