PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00142929001

Common Name

GSBRNA2T00142929001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 243aa MW: 26750 Da PI: 6.3148

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00142929001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.3	2.7e-20	6	66	25	85
trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +++p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++ GSBRNA2T00142929001 6 GQMEPKWASVSSYCRLHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEEAESYWVMRNDV 66 4899***************************************************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.3E-10	9	63	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MALGSGQMEP KWASVSSYCR LHGVNRGPVQ CRKRWSNLAG DYKKIKEWES QVKEEAESYW 60 VMRNDVRRER KLPGFFDKEV YDIVDGGVVP PANPVLALGL APASTSAEEP ARSVEKLSSA 120 SAPKSLIDVI DKEKQAACEA ADQGGMKERH PEAANPEAAS TSQEERKRKR TSSGDEEGEA 180 TKSRQDQLIE ILERNGQLLA AQLEVQNTNL KLDREQRKDH GDNLVAVLNK LADAVAKIAD 240 KL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6150	9e-87	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00142929001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189292	2e-99	AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013752299.1	1e-176	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-131	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A078GS12	1e-174	A0A078GS12_BRANA; BnaCnng05440D protein
STRING	Bra005486.1-P	1e-173	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6557	28	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-133	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]