PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143077001
Common NameGSBRNA2T00143077001, LOC106407112, LOC106409846
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 286aa    MW: 31979 Da    PI: 4.6149
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143077001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.41e-091653239
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                         +i+    r +tfskR  g+  KA+ L+ L +a+va++ 
  GSBRNA2T00143077001 16 KIQKREYRATTFSKRCSGLYSKASQLCLLSGAQVAILA 53
                         6778889****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-6670IPR002100Transcription factor, MADS-box
CDDcd002666.11E-19787No hitNo description
PROSITE profilePS5006612.054752IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-13981IPR002100Transcription factor, MADS-box
PfamPF003194.6E-111657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MVKRGGTKRK IDKMEKIQKR EYRATTFSKR CSGLYSKASQ LCLLSGAQVA ILATPPSSQS  60
NVSFFSFGHS SVDAVVKAYL TGRRLPPVRE EPMEEDIGVC LARKELGLEL WWEKESLSKS  120
KNRQELMDAI NSMERMLSKL RSGDLVSNYK QREEDLKNNE VTKTDVVLHK ETQEPDKTLD  180
LQAVCCILDD DLAVGFDKVT EEQDQILAIC DSFCAEENNS NINGSSVSLD RSDQAMDHLM  240
DIDGLIDLET TYESSAFDYG VLDSTRELHE TAGSLLINFE AARDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143077001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705853.10.0agamous-like MADS-box protein AGL97
TrEMBLA0A0D3DC520.0A0A0D3DC52_BRAOL; Uncharacterized protein
STRINGBo7g092540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.16e-62M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]