PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143109001
Common NameGSBRNA2T00143109001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 184aa    MW: 21836.7 Da    PI: 10.3612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143109001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd +l +++  lG g+W++ ar+ g++Rt+k+c++rw++yl
  GSBRNA2T00143109001 28 RGPWTVEEDFKLSNYISTLGEGRWNSLARCAGLKRTGKSCRLRWLNYL 75
                         89********************************************97 PP
2Myb_DNA-binding51.72e-1681124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GSBRNA2T00143109001  81 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 124
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6732375IPR017930Myb domain
SuperFamilySSF466897.76E-3125122IPR009057Homeodomain-like
SMARTSM007175.1E-142777IPR001005SANT/Myb domain
PfamPF002491.9E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-222982IPR009057Homeodomain-like
CDDcd001676.97E-103075No hitNo description
PROSITE profilePS5129422.91776130IPR017930Myb domain
SMARTSM007172.9E-1480128IPR001005SANT/Myb domain
PfamPF002493.2E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2383129IPR009057Homeodomain-like
CDDcd001671.56E-6101124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDGKRSFEIN KNMGDFENNV DDEMDLRRGP WTVEEDFKLS NYISTLGEGR WNSLARCAGL  60
KRTGKSCRLR WLNYLRPDVR RGNITLEEQL LILELHSRWG NRWSKIAQYL PGRTDNEIKN  120
YWRTRVQKHA KQLRCDVNSQ QFKDTMRYLW MPRLVERIQA ASASSTTVRD HQQQQQLLNN  180
RSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-262512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143109001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756570.0KM975657.1 Brassica napus MYB transcription factor 78-2.1 (MYB78-2.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596410.11e-121PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB108
RefseqXP_013646027.11e-122transcription factor MYB78-like
RefseqXP_013647364.11e-121transcription factor MYB78-like
SwissprotQ9FGY37e-92MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A3P6F0161e-120A0A3P6F016_BRAOL; Uncharacterized protein
STRINGBra010021.1-P1e-120(Brassica rapa)
STRINGBra010022.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-94myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]