PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00143224001

Common Name

GSBRNA2T00143224001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 255aa MW: 28658.5 Da PI: 10.3199

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00143224001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.7	2.7e-19	162	212	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++d+s+ +lpi++AA++L +c+T++K+iCR+ + RWP+Rk++sl GSBRNA2T00143224001 162 TRSLTVKDMSELWDLPIEEAARKLRICTTAVKKICRRGEVFRWPRRKLASL 212 6789********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.153	152	233	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-17	164	212	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MPVPVITPTP TISQGLFLCT YCNLLRQLVH ANGQEMMRLD LFGGIGYFCH AVIETRRFDG 60 SNELRYQMNL KMEDVKKFIE GYCAARAAEG FVIMQDTNAD FYQAMNACTT SSQLLMSTLP 120 PRVDIPMSLA VPNKSLNVAS VPPAAKGKPR RQTNLSAQRK RTRSLTVKDM SELWDLPIEE 180 AARKLRICTT AVKKICRRGE VFRWPRRKLA SLREKVAALK IVVSQSTDVG VRARAEVKIE 240 NFEKQIDAIY SKAR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	208	KKICRRGEVFRWPRRKL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8036	0.0	flower\| microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00143224001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240087	1e-180	AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013651295.1	0.0	uncharacterized protein LOC106355989
TrEMBL	A0A3P6AMJ6	0.0	A0A3P6AMJ6_BRACM; Uncharacterized protein
TrEMBL	M4E448	0.0	M4E448_BRARP; Uncharacterized protein
STRING	Bra023551.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-09	RWP-RK domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]