PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143424001
Common NameGSBRNA2T00143424001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 911aa    MW: 100765 Da    PI: 7.3966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143424001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07562582526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C++f + G Ck Gd C +aHg
  GSBRNA2T00143424001 562 PCPDFKK-GSCKQGDACEYAHG 582
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3601.9E-66698IPR029039Flavoprotein-like domain
SuperFamilySSF522185.51E-970153IPR029039Flavoprotein-like domain
SuperFamilySSF484032.33E-16314440IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-17317443IPR020683Ankyrin repeat-containing domain
PfamPF127964.1E-10361430IPR020683Ankyrin repeat-containing domain
SMARTSM002480.027361391IPR002110Ankyrin repeat
PROSITE profilePS5029717.847361465IPR020683Ankyrin repeat-containing domain
CDDcd002041.70E-14363454No hitNo description
PROSITE profilePS5008811.995396431IPR002110Ankyrin repeat
SMARTSM002487.2E-5396428IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.107.0E-5553584IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4557583IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5562582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028562584IPR000571Zinc finger, CCCH-type
SMARTSM00356110592615IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.362592616IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MVVVGMLCRS CVKCLNIATV NICLTCKALE ASARWWVATV LPPSGDHIVL ELHQQSFFTC  60
IGDDEVDDGR KKVTIFFGTQ TGTAEGFAKA LGEEAKARYE RSDSKSLIWT IMMLMMMRNR  120
QYVLQVAKVV DDILVEQGAQ RLVQVGLGDD DQCIDYSTLV ETSLFTDTSC SIRKCSGALE  180
SVLERPEVPS MIGYTTLTYV PRDSPQRSVH LAVRAWDDLL ETATRAGLAR RDPQRDEPAA  240
LRLIDLLPSP RPFGSGNVVL SFGHLTFRFR QPLIFRQGHT FILSMCGLFK KLDTENNALS  300
HSLSKPMNDA AECEHSFSAL LEFAADNDVD GFKHQLSLVS SINQVSLWYR RQRLIKRMVV  360
EQRTPLMVAS LYGSLDVVKL ILSFPETDLN LTCGPDKSTA LHCAASGASV KALDVVKLLL  420
SAGADPNITD THGNSPVDVL VAPRGLRTVL EEILKKDEDL SSSLGSSFRS LSSSPDNGSS  480
SLLSLDSVSS PTKAEKKEYP IDPSLPDIKS GVYSTDEFRM FSFKIRPCSR AYSHDWTECP  540
FAHPGENARR RDPRKSHYTC VPCPDFKKGS CKQGDACEYA HGVFECWLHP AQYRTRLCKD  600
GTGCNRRVCF FAHLKEELRP VYASTGSGLP SSPRGSMDMA SVLNMLPGSP SGAAPSSPSN  660
GVSSMCWPHQ NVPPALHLPG SNVQLSRLRS SLNARDMLQE FEMSSSPRFM NHFSAAEVSS  720
SSPRFSDQLA VSSVLSPSHK SVLLNQLQRD KQQSMLSPIR TNLMSSPNNV EQRAMEPISP  780
MNARMKQQQQ LHHSRSLSSR EFGSNLPRDM MMQSDSGSPL SPWSSWDQNH KVDWSVQSDE  840
LGRLRKSHSL ANNKEADVTW VQQMVKETAS PRNMNGARPL VQGGLSGDPH RDGRESDILD  900
AWLDQLQLDR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gxu_A4e-14631052466NADPH--cytochrome P450 reductase 2
5gxu_B4e-14631052466NADPH--cytochrome P450 reductase 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.247030.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143424001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013679402.10.0zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLM4E3M60.0M4E3M6_BRARP; Uncharacterized protein
STRINGBra023379.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]