PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143449001
Common NameGSBRNA2T00143449001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 235aa    MW: 26014 Da    PI: 4.8813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143449001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-1861111155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  GSBRNA2T00143449001  61 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 111
                          68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-1261111IPR001471AP2/ERF domain
PROSITE profilePS5103222.72162119IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-2162120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-3162120IPR001471AP2/ERF domain
SMARTSM003802.1E-3562125IPR001471AP2/ERF domain
CDDcd000184.65E-3263121No hitNo description
PRINTSPR003671.6E-96374IPR001471AP2/ERF domain
PRINTSPR003671.6E-985101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVSSVSKSTS TDEYDDTIHK ERVSQLHSPY SSSDLVSQEI KAEQTDNSKK TKRVKDSGRH  60
PVYHGVRMRN WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GSSAILNFPE  120
LVESFPRPVS LSPRDIQTAA LKAAQMEPTT SFASSSSSST SSLESLVLVM DLSRTEAEEL  180
GEIVELPSLE PSYGVNVGNE FVFSDSVDYC FYPPPWGELS EDGYGFNQVL SWDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18601191272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143449001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125819.11e-154PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD31e-105DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3P6ALE31e-170A0A3P6ALE3_BRACM; Uncharacterized protein
STRINGBra023332.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-105ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]