PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143470001
Common NameGSBRNA2T00143470001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 362aa    MW: 41085.8 Da    PI: 4.7922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143470001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.47.2e-33261511128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          ++pGfrF+Ptdeel+++yLk+kv++k++ l + i ev +yk  +P+ L+  +k+k++e+ew+fF++ +k y  +  + r+t++g W++ g
  GSBRNA2T00143470001  26 MAPGFRFNPTDEELISYYLKRKVQRKPIAL-DPIGEVAVYKQeDPSGLRdqSKMKTTEREWFFFTTLEK-YGDSGYAVRSTAKGNWRERG 113
                          579*************************99.89*****999868****85348889999*****99866.77888899999********* PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++k++++  +g+++g +k Lvf+     + + t+Wv+hey+l
  GSBRNA2T00143470001 114 REKKIKRGgDGQVIGNRKRLVFF----TNNQATNWVIHEYQL 151
                          ******9878899**********....344579*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3524169IPR003441NAC domain
PROSITE profilePS5100537.33126171IPR003441NAC domain
PfamPF023651.7E-2328151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRGLTTDQV LPASEAVLTT ATGRPMAPGF RFNPTDEELI SYYLKRKVQR KPIALDPIGE  60
VAVYKQEDPS GLRDQSKMKT TEREWFFFTT LEKYGDSGYA VRSTAKGNWR ERGREKKIKR  120
GGDGQVIGNR KRLVFFTNNQ ATNWVIHEYQ LVDDDGHVET DAYVLCRLFD SSGSINAPFS  180
EQEWDDADNE KIQKASNSRS MDLFDLNELP REFEIGDDDS KAVDQDDNNN DACLLPCVLN  240
KEAPLPFVRY RRKRQLDSDN SIQTTPKTTS GTTIPYVAAL LERSEPEPVD ATMVVPTSSY  300
TEELIKDLQK ERQQIAVERE RYKLEMTNAE MTISDLVGKN DALRTEIEEL KKKNSNKEQG  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-222617417168NO APICAL MERISTEM PROTEIN
1ut4_B4e-222617417168NO APICAL MERISTEM PROTEIN
1ut7_A4e-222617417168NO APICAL MERISTEM PROTEIN
1ut7_B4e-222617417168NO APICAL MERISTEM PROTEIN
3swm_A4e-222617420171NAC domain-containing protein 19
3swm_B4e-222617420171NAC domain-containing protein 19
3swm_C4e-222617420171NAC domain-containing protein 19
3swm_D4e-222617420171NAC domain-containing protein 19
3swp_A4e-222617420171NAC domain-containing protein 19
3swp_B4e-222617420171NAC domain-containing protein 19
3swp_C4e-222617420171NAC domain-containing protein 19
3swp_D4e-222617420171NAC domain-containing protein 19
4dul_A4e-222617417168NAC domain-containing protein 19
4dul_B4e-222617417168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143470001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893930.0AC189393.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB054O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125795.10.0PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A3P6A5S10.0A0A3P6A5S1_BRACM; Uncharacterized protein
STRINGBra023314.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.29e-62NAC domain containing protein 52
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]