PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143537001
Common NameGSBRNA2T00143537001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 456aa    MW: 51719.7 Da    PI: 4.7869
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143537001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3397.61.7e-121302781257
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          ++lk+rmwkdq+l+++lk++k++++   ++ ++     ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sds
  GSBRNA2T00143537001  30 DDLKRRMWKDQNLMEKLKQQKRDNT---DV-VSL--PTHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDS 113
                          79********************976...33.444..4589************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          Lr+WWke+v fd+n+p+a++ y    l+++ ++  + e+ss  h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWPtG+elw
  GSBRNA2T00143537001 114 LRRWWKENVDFDQNAPNAVAGY--LTLAAAAAELIEKEPSSLLHMLQELQDTTLGSLLSALMQHCAPPQRRFPLEKGIAPPWWPTGTELW 201
                          **********************..345555555667799*************************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257
                          wge+g++++qg ppy+kphdl+k wkvsvL+avikhmsp++ ++r+l+rqsk+lqdkm+ake++++++vlnqee+++
  GSBRNA2T00143537001 202 WGEQGAAHEQGVPPYRKPHDLRKSWKVSVLAAVIKHMSPNLGRVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALL 278
                          **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048738.2E-11930275No hitNo description
Gene3DG3DSA:1.10.3180.103.8E-68151279IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.31E-59154278IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MVEVEELEPL SPVEDGDEGE EEEEEDISYD DLKRRMWKDQ NLMEKLKQQK RDNTDVVSLP  60
THRAEASRRK KMARSQDSVL KYMMKIMEVC KAKGFVYGIV PEKGKPITGS SDSLRRWWKE  120
NVDFDQNAPN AVAGYLTLAA AAAELIEKEP SSLLHMLQEL QDTTLGSLLS ALMQHCAPPQ  180
RRFPLEKGIA PPWWPTGTEL WWGEQGAAHE QGVPPYRKPH DLRKSWKVSV LAAVIKHMSP  240
NLGRVRRLAR QSKCLQDKMM AKETDTWSRV LNQEEALLNI KDLKISEDQE PSGSKTKRKG  300
DNIIEPSKSV YTCQNSSCPK SDASLGFMDK NSRTGHEIQC LYGSSSQSTG ETSSVLETAP  360
SIGTNTTSED DYSASSSAMG KRDHDDHSNW LDYLWYERMQ QEFNFSRRLE DVDDDTAVDL  420
NQLLGSDQSS DNVDHNNFSV WDMGCEDKDI YMFDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-591552774126Protein ETHYLENE INSENSITIVE 3
4zds_B2e-591552774126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143537001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400890.0AC240089.1 Brassica oleracea clone BOT01-64A15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125328.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
RefseqXP_013712350.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A3P6AL050.0A0A3P6AL05_BRACM; Uncharacterized protein
TrEMBLM4EII60.0M4EII6_BRARP; Uncharacterized protein
STRINGBra028601.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]