PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00143612001

Common Name

GSBRNA2T00143612001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 93aa MW: 10774.5 Da PI: 8.4993

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00143612001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.2	5e-10	14	45	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+W++eEd +lv +++++G g+W+t +++ g GSBRNA2T00143612001 14 KGKWSAEEDRILVAYINEYGLGDWRTLPKRAG 45 79**************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.845	9	54	IPR017930	Myb domain
SuperFamily	SSF46689	6.21E-9	9	45	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-10	12	45	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-7	14	45	IPR001005	SANT/Myb domain
CDD	cd00167	6.58E-6	16	45	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MERTTWFDND GLKKGKWSAE EDRILVAYIN EYGLGDWRTL PKRAGINIYL HPIHMHTLRT 60 DHLGFCSFIR VNWDCIAGLV LNRVFKPVLC NI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00143612001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013649727.1	2e-22	transcription factor MYB106

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74430.1	6e-20	myb domain protein 95

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]