PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143656001
Common NameGSBRNA2T00143656001, LOC106387248
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 198aa    MW: 21998.4 Da    PI: 4.304
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143656001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-192070155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+y+GVr +k +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  GSBRNA2T00143656001 20 SKYRGVRKRK-WGKWVSEIRLPRS---RERIWLGSYDTPEKAARAFDAAQFCLRG 70
                         89*****999.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-122070IPR001471AP2/ERF domain
CDDcd000184.45E-272080No hitNo description
SuperFamilySSF541712.03E-192079IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-262178IPR001471AP2/ERF domain
SMARTSM003802.8E-282184IPR001471AP2/ERF domain
PROSITE profilePS5103222.1942178IPR001471AP2/ERF domain
PRINTSPR003673.6E-102233IPR001471AP2/ERF domain
PRINTSPR003673.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVKKAMKEEE EENRNSSMQS KYRGVRKRKW GKWVSEIRLP RSRERIWLGS YDTPEKAARA  60
FDAAQFCLRG GDSAFSFPYN PPSISGGRSL TAPEIREAAA RFANAQDNII SVRGEESGLS  120
EIRPESPSTS VSEVDTSSAT TLDCDLSLFD LLPADFGMFP GFDDFSDGFS GDGITEILTI  180
EDYGEEILDG TFFLWDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1519861280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.92080.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143656001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896050.0AC189605.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH015N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588750.11e-142PREDICTED: ethylene-responsive transcription factor ERF018-like
RefseqXP_013682520.11e-142ethylene-responsive transcription factor ERF018
SwissprotQ9S7L55e-85ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A0D3CWL11e-140A0A0D3CWL1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GAD91e-140A0A3P6GAD9_BRAOL; Uncharacterized protein
STRINGBo6g086740.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-78ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]