PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00143999001
Common NameGSBRNA2T00143999001, LOC106356267
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 205aa    MW: 22392 Da    PI: 8.849
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00143999001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016121143123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+Cg  F+    L  H+r+H
  GSBRNA2T00143999001 121 HRCPICGVEFPMGQALGGHMRKH 143
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.1E-76589No hitNo description
PfamPF139129.4E-106690IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6816794IPR007087Zinc finger, C2H2
SMARTSM003550.626789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-7116143No hitNo description
SMARTSM003550.024121143IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-11121144IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492121148IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVARSENLNR TVENRAQDSE KLDRTVEGTA ANNEKLERTV EDKAANCLML LSRIGENGGG  60
GRESRVYRCK TCMKEFSSFQ SLGGHRASHN KHVNNNSSDE QSSLSSGSIA KRKTTNTTRS  120
HRCPICGVEF PMGQALGGHM RKHRNEEEAS GALVTRSFFP EAATSMITTL KKSSSGKRVE  180
CFDLGPDSAE SSINLNLELG RSMY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00143999001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651513.11e-149zinc finger protein ZAT8
SwissprotQ9LX853e-70ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A0D3BHG21e-146A0A0D3BHG2_BRAOL; Uncharacterized protein
TrEMBLA0A3N6PW191e-146A0A3N6PW19_BRACR; Uncharacterized protein
TrEMBLA0A3P6AWF81e-146A0A3P6AWF8_BRAOL; Uncharacterized protein
STRINGBo3g130310.11e-147(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-68C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]