PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00144257001

Common Name

GSBRNA2T00144257001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 603aa MW: 65235.9 Da PI: 4.6341

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00144257001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	117.1	9.7e-37	310	408	2	98
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 lfqrlw++eDei lL+G++d+ ++++g+s++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k +sgke++f+++hdq +f GSBRNA2T00144257001 310 LFQRLWTDEDEIELLRGFLDYvATHRGTSSHPpDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGKEVVFKSSHDQATF 399 79*****************888999999****************************************************** PP DUF573 90 elskkiWgs 98 ++s+kiW++ GSBRNA2T00144257001 400 DISRKIWNQ 408 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.140.10	1.1E-42	25	146	No hit	No description
SuperFamily	SSF53927	1.65E-39	26	144	IPR016193	Cytidine deaminase-like
PROSITE profile	PS51747	23.606	29	143	IPR002125	Cytidine and deoxycytidylate deaminases, zinc-binding
Pfam	PF00383	6.0E-22	30	129	IPR002125	Cytidine and deoxycytidylate deaminases, zinc-binding
CDD	cd01285	7.26E-44	35	142	No hit	No description
PROSITE pattern	PS00903	0	81	118	IPR016192	APOBEC/CMP deaminase, zinc-binding
Pfam	PF04504	2.7E-33	311	407	IPR007592	Protein of unknown function DUF573

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding
GO:0016787	Molecular Function	hydrolase activity

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence Send to blast
MEYVCVVEAK DGTISVATAF AGHQQAVQDS DHKFLTQAVE EAYKGVDCGD GGPFGAVIVH 60 KNEVVASCHN MVLKYTDPTA HAEVTAIREA CKKLNQIELS ECEIYASCEP CPMCFGAIHL 120 SRLKRLVYGA KAEAAIAIGF DDFIADALRG TGVYQKSNLE IKKADGNGAA IAEQVFQNTK 180 EKFQEEEEMS PSDEREAVFS LESPELEEDG SGGGGGGGAG GETDSDEEAV IPEPNAPDED 240 DDHEYEDLNS PLVSAAAKSS SAATDTVTVA LPAGSAVPVS SIPADSDPKW HRTTEIVHLR 300 PPPLDDSRRL FQRLWTDEDE IELLRGFLDY VATHRGTSSH PPDTAPFYEQ IKSKLQLEFN 360 KNQLVEKLRR LKKKYRNVMS KFSSGKEVVF KSSHDQATFD ISRKIWNQTG KIIGFEDNNV 420 MEFEETNGNN AHVEVDSENV LEKKGTVSSG SRKRPRSRIG KIDEDKAVSL SDGPVPSVNL 480 NENVSAFGEF GDGRNLGGLI EETVKSCVSP LIKEMMNGTT GMMMAAVGGF PGGGGAHAMG 540 VLSPMLMPSV NPLGFGGGGG VGDERWRRQQ ILELEVYSRR LELVQEQIRA TVNELKTMPS 600 GG*

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence Send to blast

MEYVCVVEAK DGTISVATAF AGHQQAVQDS DHKFLTQAVE EAYKGVDCGD GGPFGAVIVH  60
KNEVVASCHN MVLKYTDPTA HAEVTAIREA CKKLNQIELS ECEIYASCEP CPMCFGAIHL  120
SRLKRLVYGA KAEAAIAIGF DDFIADALRG TGVYQKSNLE IKKADGNGAA IAEQVFQNTK  180
EKFQEEEEMS PSDEREAVFS LESPELEEDG SGGGGGGGAG GETDSDEEAV IPEPNAPDED  240
DDHEYEDLNS PLVSAAAKSS SAATDTVTVA LPAGSAVPVS SIPADSDPKW HRTTEIVHLR  300
PPPLDDSRRL FQRLWTDEDE IELLRGFLDY VATHRGTSSH PPDTAPFYEQ IKSKLQLEFN  360
KNQLVEKLRR LKKKYRNVMS KFSSGKEVVF KSSHDQATFD ISRKIWNQTG KIIGFEDNNV  420
MEFEETNGNN AHVEVDSENV LEKKGTVSSG SRKRPRSRIG KIDEDKAVSL SDGPVPSVNL  480
NENVSAFGEF GDGRNLGGLI EETVKSCVSP LIKEMMNGTT GMMMAAVGGF PGGGGAHAMG  540
VLSPMLMPSV NPLGFGGGGG VGDERWRRQQ ILELEVYSRR LELVQEQIRA TVNELKTMPS  600
GG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5jfy_A	3e-93	17	154	2	139	Deoxycytidine deaminase
5jfy_B	3e-93	17	154	2	139	Deoxycytidine deaminase
5jfy_C	3e-93	17	154	2	139	Deoxycytidine deaminase
5jfy_D	3e-93	17	154	2	139	Deoxycytidine deaminase
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.6365	0.0	flower\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00144257001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF458409	0.0	AF458409.1 Brassica oleracea deoxycytidine deaminase (DCTD1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013677662.2	0.0	probable transcription factor At5g28040
Swissprot	F4K5T4	0.0	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A3P5Z4Z3	0.0	A0A3P5Z4Z3_BRACM; Uncharacterized protein (Fragment)
STRING	Bo7g093330.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-170	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]