PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144271001
Common NameGSBRNA2T00144271001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 611aa    MW: 69882.6 Da    PI: 7.4684
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144271001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.13.4e-16101182286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 
                          W+ +evlaL+++r+ +e+++ +       We+ s+k++e gf+rsp++Ckek+e+ ++ry + +++ + +  ++ ++ ++++f++++
  GSBRNA2T00144271001 101 WCSDEVLALLRFRSTVENWFPEF-----TWEHTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNNNTNAHhmSNYNKGNYRLFSEVD 182
                          ********************998.....9*****************************99999888777734466666788887765 PP
2trihelix99.92.1e-31449547186
             trihelix   1 rWtkqevlaLiearr...........emeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                          rW+++evlaLi++rr           +                    ++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +
  GSBRNA2T00144271001 449 RWPRDEVLALINIRRsissmndddhrK--------DdirlsspssstKAVPLWERISKKMLEVGYKRSAKRCKEKWENINKYFRKTKDVN 530
                          8**************777665555432........02333334444499***************************************** PP

             trihelix  69 kkrtsessstcpyfdqle 86 
                          kkr + +s+tcpyf+ql+
  GSBRNA2T00144271001 531 KKR-PLDSRTCPYFHQLT 547
                          **8.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-1199165No hitNo description
PROSITE profilePS500905.482100152IPR017877Myb-like domain
Gene3DG3DSA:1.10.3550.105.3E-4294373IPR027432Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain
PfamPF138372.7E-19448548No hitNo description
CDDcd122036.12E-25448527No hitNo description
PROSITE profilePS500906.737449520IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MFDGGVPEQI HRFIASPQPP PPLPPHQPAA ERSLPFPVSF ASFNTNHQAH MLNLDGPKIT  60
HHHHHHHHHH HDIKDSSATS EWMGHTDHDG DNHRHHHHHP WCSDEVLALL RFRSTVENWF  120
PEFTWEHTSR KLAEVGFKRS PQECKEKFEE EERRYFNSNN NTNAHHMSNY NKGNYRLFSE  180
VDEFYHHGHA GGEHVVSSEV GDNQNKTNSS LEGKGNVEET GQDLLEDKTD HQDQGQVDES  240
SMRDKMNSID TVGKVGNVED DAKSSSSASL MMIMRDNKKR KRKKKKERFG VLKGFCEGLV  300
SNVIAQQEEM HKKLLEDMVK KEEEKIAREE VWKKQEMERL NKELEIRAQE QAMASDRNTS  360
IIKFISKFTD HYNHDDGNNK VQSPNPSQDS FSLVLSKPQG SRKCQTSSSL QTLTPQNPSL  420
EPTSPKTLKI KTKNPKAPKG DEQGDIGKRW PRDEVLALIN IRRSISSMND DDHRKDDIRL  480
SSPSSSTKAV PLWERISKKM LEVGYKRSAK RCKEKWENIN KYFRKTKDVN KKRPLDSRTC  540
PYFHQLTALY SQPSTGTTTT VTADTSVEEL ETRPKENRVG SGDSDIPTAM HVDGASEKSN  600
EQFSGFDLAF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277282KKRKRK
2277284KKRKRKKK
3277285KKRKRKKKK
4278286KRKRKKKKE
5279283RKRKK
6279285RKRKKKK
7279286RKRKKKKE
8281286RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144271001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022571291.10.0trihelix transcription factor GTL2-like
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLM4D0J60.0M4D0J6_BRARP; Uncharacterized protein
STRINGBra009994.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]