PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144356001
Common NameGSBRNA2T00144356001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 305aa    MW: 34650.4 Da    PI: 6.0717
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144356001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.85.9e-081955339
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                         i     r  tfskR  g+  KA  L+ L da++a++ 
  GSBRNA2T00144356001 19 ITKREYRANTFSKRCSGLHSKAAQLCLLADAQIAILA 55
                         566677899*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-5872IPR002100Transcription factor, MADS-box
CDDcd002661.12E-15986No hitNo description
PROSITE profilePS5006611.353954IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-121183IPR002100Transcription factor, MADS-box
PfamPF003191.2E-81859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVKRVGGGTK RKIDKMEKIT KREYRANTFS KRCSGLHSKA AQLCLLADAQ IAILATPPSS  60
QSNVSFFSFG HSSVDTVVKA YLTGQRLAPV REEPMEEDIG LWWEKESLSK SKDPRELMDA  120
VKAMERMLSK LRSGDFVSNY KQREEDLKNN EMTKRDVVLH KETQEPDETL NLQTVCCIPD  180
DDSPAGCDKI TEEQKQILAI CDSFCAKEDN NINGLSGSLD RSDQAMDHLM NIDGLIDLET  240
TYESSAFDYG FSDSTQEIHK TAGIYSNERV LRIKFGRFYY SLNCYKKQCL YMCNMYVFLI  300
YGKF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144356001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013646066.10.0agamous-like MADS-box protein AGL97
TrEMBLA0A3P5YM891e-171A0A3P5YM89_BRACM; Uncharacterized protein
TrEMBLM4F8M21e-171M4F8M2_BRARP; Uncharacterized protein
STRINGBra037434.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49420.13e-61M-type_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]