PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144621001
Common NameGSBRNA2T00144621001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 111aa    MW: 12753.9 Da    PI: 9.9182
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144621001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.3e-11531091775
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                   B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                          vlp  f++ +++  +  k ++l d++g +W++kl ++k ++r+ l +GWkeF +an++k
  GSBRNA2T00144621001  53 VLPIAFTKLNKIRMA--KRMSLLDKHGVKWSIKLWFEKERKRMRLVGGWKEFYDANDVK 109
                          899999988877644..57***************88********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1052109IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-952109IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-1253109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.77153110IPR003340B3 DNA binding domain
CDDcd100177.79E-1153109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEESQQEPQE GGKSSYVQWS PQENNTLINL LLDCITAVHG FGFLVSLLSL AQVLPIAFTK  60
LNKIRMAKRM SLLDKHGVKW SIKLWFEKER KRMRLVGGWK EFYDANDVKI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144621001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896331e-121AC189633.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004A14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888131.12e-24putative B3 domain-containing protein REM15
SwissprotO230761e-15REM15_ARATH; Putative B3 domain-containing protein REM15
TrEMBLA0A3P5YLC47e-76A0A3P5YLC4_BRACM; Uncharacterized protein
TrEMBLM4E9457e-76M4E945_BRARP; Uncharacterized protein
STRINGBra025301.1-P1e-76(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.16e-18B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]