PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00144875001

Common Name

GSBRNA2T00144875001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

SRS

Protein Properties

Length: 298aa MW: 33120.1 Da PI: 6.7565

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00144875001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	110.2	3.3e-34	1	100	6	101
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkl 91 ++CqdCGnqakkd ++RCRtCCksrgfd +thvkstWvpaakrrerq+qla + +k++++a +++ +++ + sal++ ++ GSBRNA2T00144875001 1 MNCQDCGNQAKKDFPYMRCRTCCKSRGFDYQTHVKSTWVPAAKRRERQAQLACLPTKRSREAssggGDDDDDENGAQGGGGGSALACIRV 90 68***************************************************9999888874443223333333334556677888888 PP DUF702 92 ssaeskkele 101 ++a+s+ ++ GSBRNA2T00144875001 91 VNASSSASSV 100 7777665443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.0E-28	1	66	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.7E-26	2	44	IPR006510	Zinc finger, lateral root primordium type 1

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MNCQDCGNQA KKDFPYMRCR TCCKSRGFDY QTHVKSTWVP AAKRRERQAQ LACLPTKRSR 60 EASSGGGDDD DDENGAQGGG GGSALACIRV VNASSSASSV ATTTAVTASN INSATVDLSS 120 AYTSAAAPIN SFITSGTSLL HLLEDYEYQK NYFEGFVVVR QYDPLVQDPL GRDDTERDDE 180 SNGKTFDWSE KRSSSQLKRA QELKRESIIP KRIGTGWFVN NYPTKNLKFE MYKIEMVNGE 240 MSLEPGNLGM KEWLKENVKE EEHVVMKAEV GVLEEMMRSK TIKWWISLLG MQANRAN*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14557	1e-113	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00144875001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189558	1e-116	AC189558.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006P24, complete sequence.
GenBank	GU205268	1e-116	GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D3D3T7	0.0	A0A0D3D3T7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6EGA6	0.0	A0A3P6EGA6_BRAOL; Uncharacterized protein
STRING	Bo7g019830.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	2e-32	SHI-related sequence 7

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]