PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00145172001

Common Name

GSBRNA2T00145172001, LOC106365683

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 149aa MW: 16545.8 Da PI: 7.505

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00145172001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	38	75	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R d+ ++++ L++++ + +K + a++L+ A +YI L GSBRNA2T00145172001 38 RKDKAGERISALQQIVSPY-----GKTDTASVLQDALHYIEFL 75 56666689999**9999.....9*************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.175	26	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-10	37	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-7	37	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MEFSREAGMM MENKQNVCSL EENSIKRHKS DLSFSSKRKD KAGERISALQ QIVSPYGKTD 60 TASVLQDALH YIEFLHEQVK VLSAPYLQTM TSATQEELEQ YSLRNRGLCL VPMEYTAGVA 120 QSNGADIWAP VKTPPSPAFG VKSQSPFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00145172001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353054	1e-157	AK353054.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-J10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013660603.1	1e-109	transcription factor bHLH153 isoform X3
Refseq	XP_022563729.1	1e-109	transcription factor bHLH153 isoform X3
Refseq	XP_022563730.1	1e-109	transcription factor bHLH153 isoform X3
Swissprot	Q7XJU2	7e-95	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A397YFY5	1e-106	A0A397YFY5_BRACM; Uncharacterized protein
STRING	Bra030622.1-P	3e-96	(Brassica rapa)
STRING	Bo8g005780.1	1e-104	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3316	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	3e-97	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106365683

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]