PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00145482001
Common NameGSBRNA2T00145482001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 362aa    MW: 38238 Da    PI: 4.39
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00145482001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35491412103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+ +++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k
  GSBRNA2T00145482001  49 FLTKTYQLVDDPVYDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEK 129
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                           ll++i+r+k +
  GSBRNA2T00145482001 130 ILLRDIQRRKIS 141
                          *********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5745138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.13E-3446138IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3746138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3149138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-204972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-20100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1706.3E-5216244No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MPGEQTGETP TAAGVGGGGG GCSAGNSGGS SGCGPVGGGD SQRSIPTPFL TKTYQLVDDP  60
VYDDLISWND DGSTFIVWRP AEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS  120
NDCFRRGEKI LLRDIQRRKI SQPAMAAAAA AAAAAAVNVA AAVPAVPHAV SPSNSGEEQV  180
ISSNSSPAAA AAASGGGGGQ AGVVLQRTTS CTTAPELAEE NERLRKENVQ LSQELTKLKG  240
LYSNIYTLMS NFTSGQTDCA PEGRALDLMP ERMGEDMATA SGVETGIGLK LDEDLTPRLF  300
GVSIGAKRAR RDEVVTAEEE DDERREGSNQ EGGEQGSDVK SEPMEEDNSD EHNGPWLELG  360
N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-273513815129Heat shock factor protein 1
5d5v_B2e-273513815129Heat shock factor protein 1
5d5v_D2e-273513815129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.222771e-154seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00145482001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325472e-56AC232547.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611767.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_013714497.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-153HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A078J5920.0A0A078J592_BRANA; BnaC09g52680D protein
TrEMBLA0A3N6Q6T20.0A0A3N6Q6T2_BRACR; Uncharacterized protein
TrEMBLA0A3P6EEX50.0A0A3P6EEX5_BRAOL; Uncharacterized protein
STRINGBra040968.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-135HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]