PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00145729001
Common NameGSBRNA2T00145729001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 678aa    MW: 74117 Da    PI: 8.3568
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00145729001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like53.94e-17125175354
              G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                          ++ Wt+ L ++F +a++++ G +k tP +il++m+++ Lt++h++S LQkYR
  GSBRNA2T00145729001 125 KIIWTSSLENHFCKAIQHI-GVHKVTPTKILKFMNLNYLTRAHIASKLQKYR 175
                          789****************.9******************************* PP
2Response_reg47.78.3e-1738429108
                          ESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
         Response_reg  29 addgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                          a d++eal +l+ +   +D++++   mp+++G++l ++i+ee  ++p+iv+++  ++e  +e l+ Ga+ f  Kp++p+++ 
  GSBRNA2T00145729001   3 ANDSSEALSTLRGHCnnIDVVITEYHMPNLNGVQLQRRINEEFGNMPVIVISSDMNNEIEQETLSSGAMCFMRKPIKPNDID 84 
                          67889999999766566************************99***********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011023.954191IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.9E-17391No hitNo description
SuperFamilySSF521722.85E-16394IPR011006CheY-like superfamily
CDDcd001561.23E-13383No hitNo description
PfamPF000721.1E-13386IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466899.32E-12121180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-17121181IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-16124176IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MKANDSSEAL STLRGHCNNI DVVITEYHMP NLNGVQLQRR INEEFGNMPV IVISSDMNNE  60
IEQETLSSGA MCFMRKPIKP NDIDTIYKHA LDYKINGGSK EIQKTNSTSN PEDGSSGAKA  120
TKKFKIIWTS SLENHFCKAI QHIGVHKVTP TKILKFMNLN YLTRAHIASK LQKYRKFLKK  180
VKGESVEKTR RVMISNIQSS SYINPQRSYN YKTSLGNNNI FNSQRGYGLG QSSHTMNNNA  240
GFHGSVHCMN RTPTYNSQTG SKFLPRRGSL GVSSGMFALK EEMGSMSGTS QEYQAHKFGQ  300
YGTTSGALGM KSNLNTGTTG SNYAGHRIDE KGDVFGPGGI RVNVNENASL GRMRVTGNGN  360
GSLGGIRIHA TGNGCFGGTR VQGNSNGFLG EIKVHGIGNG SLGGTEVRGN DNGFLNERRV  420
RGTGNGSLGG TRIQGNDNGF LDEIRVHGNH NGSFGEIRVH GNDSFGGLRV NSTDNGNGCL  480
DGVMIHGNIN ANGSLGGMRV HTGNGNASLD ENLSSMNWNF NNNNMSNHGS STSRFPSALS  540
SFFDNKDQSQ NYLNAQTGGV VPVLQNPRRP NNHHGINDFF RDTVNSQFDH NQQQGKVTGE  600
NPEVPPAYPL ENLSNGNYNE ETLNSVANSE MYFPTDQNMI ITNKEYGVED LMELPLSFDQ  660
DYEDENLLKF LLEHDMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00145729001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624468.10.0PREDICTED: uncharacterized protein LOC106330569
TrEMBLA0A3P6AT360.0A0A3P6AT36_BRAOL; Uncharacterized protein
STRINGBo3g108010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1654279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.12e-44response regulator 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]