PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146013001
Common NameGSBRNA2T00146013001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 541aa    MW: 61276.2 Da    PI: 4.5256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146013001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-07388431145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          r rW+++E + ++++++ +G +  + + + ++++Rtl q+k+++ 
  GSBRNA2T00146013001 388 RTRWSEQETQVFYEGIQAFGIN-LSMVQQFLPERRTLHQIKLKYK 431
                          78******************99.********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.7E-22381466No hitNo description
Gene3DG3DSA:1.10.10.606.0E-5384431IPR009057Homeodomain-like
SMARTSM007171.0E-5387436IPR001005SANT/Myb domain
SuperFamilySSF466895.81E-7389440IPR009057Homeodomain-like
CDDcd001670.00942390431No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVSPSLSKSM FLLSQVLTFI SYFLLQAPKK DKVLPASSKP AKSRSGKQKK KNATGVAYVL  60
HACSKLNSEG QKCDEGTEAV LAFPDDPRRQ DSATFGDFVT SETDEVINAQ TQRMQTEGEV  120
ECHWNMETLD IVQEEGITSA YEEQHSGKFQ PKPRLLDTVI EEEPGSHYSV DDTTGANQSE  180
CMVNDESRND ECTNTAFYGE YQEEEHNIPQ VHKESAPDVL EQEHRVVSPS NNDTVMGQGE  240
TQFNEAETRT DKKGEKKRGR KKKATTNEEE ANKSPEKKKL KHSSRRQKNT LEKELLETPD  300
DDIKHLPIRD MLRLVAYRES LEKKEAKGAP VVPPTQESNN TNVSWDNQYY SQGFDAQDEF  360
GMEEGENHVQ VKPDSPVNYQ TYMKKTPRTR WSEQETQVFY EGIQAFGINL SMVQQFLPER  420
RTLHQIKLKY KLEERKNPLK IDDALSTPCK DLTRYHIVLK KLQQEAAPAN EEEEPGEEAE  480
TTSDVPENEE QTKTDGVAGD GVKESDGEDV ENGVRSDGGD QFDENEGDDD DFWNSYKSEM  540
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551GKQKKKN
2259280RKKKATTNEEEANKSPEKKKLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.6780.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146013001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724638.10.0uncharacterized protein LOC106428429
TrEMBLA0A3P6DAU70.0A0A3P6DAU7_BRAOL; Uncharacterized protein
STRINGBo01097s050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-140MYB_related family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]