PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00146105001

Common Name

GSBRNA2T00146105001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 216aa MW: 22982.6 Da PI: 9.8674

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00146105001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.5e-39	11	175	3	118
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnss 86 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++ + GSBRNA2T00146105001 11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvsaslR-------GNSTT 93 79*************************************************************999996664332221.......22111 PP TCP 87 sg..................................................kaaksaakskksqksaasalnlak.esraka 118 + + a++++ +++q++aa l +++ +++++a GSBRNA2T00146105001 94 TScnssssldhkpllgsspfilgkrvradedtssgfwavparpefgqvwsfaAGATQEMFLQQQQQQAA-GLFVHHqQQQQQA 175 112233446677788888999999999999999999999999999999998644444444444444444.3444441333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.7E-35	16	173	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	16	70	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL 60 RQAEPSIIAA TGTGTTPASF STVSASLRGN STTTSCNSSS SLDHKPLLGS SPFILGKRVR 120 ADEDTSSGFW AVPARPEFGQ VWSFAAGATQ EMFLQQQQQQ AAGLFVHHQQ QQQQAAMGEA 180 SAARVGNYLP GHLNLLASLS SGAPGSGRGE DDDQR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13957	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00146105001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013606593.1	1e-143	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-104	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A3P6DB09	1e-157	A0A3P6DB09_BRAOL; Uncharacterized protein
STRING	Bo9g014260.1	1e-142	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-76	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]