PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146339001
Common NameGSBRNA2T00146339001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 527aa    MW: 59125.6 Da    PI: 9.659
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146339001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.9e-15360449198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          f+k +++s+v+   +l lp++f+ +h  +     + ++tl de+  +   k+  +k++    l++GW++F+ +++L +gD vvF+l++ +
  GSBRNA2T00146339001 360 FIKPMLQSHVTGGFWLGLPRQFCHTHlpK----YDEMITLVDENEDESVTKYLADKNG----LSGGWRGFAIDHQLVDGDAVVFHLINPT 441
                          89*********************999443....3458********9999999777777....************************9867 PP

                          EE..EEEEE- CS
                   B3  89 efelvvkvfr 98 
                          +f  +v ++r
  GSBRNA2T00146339001 442 TF--KVYIVR 449
                          77..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF580385.23E-14128197No hitNo description
SMARTSM003975.7E-6132199IPR000727Target SNARE coiled-coil homology domain
PROSITE profilePS5019213.696137199IPR000727Target SNARE coiled-coil homology domain
Gene3DG3DSA:1.20.5.1104.1E-18137199No hitNo description
CDDcd158418.13E-17140197No hitNo description
PROSITE patternPS009140143182IPR006012Syntaxin/epimorphin, conserved site
PfamPF057393.8E-9174225IPR000727Target SNARE coiled-coil homology domain
Gene3DG3DSA:2.40.330.102.4E-19351450IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-24353451IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-24358449No hitNo description
SMARTSM010191.6E-22360451IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912360451IPR003340B3 DNA binding domain
PfamPF023621.7E-13360449IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006886Biological Processintracellular protein transport
GO:0061025Biological Processmembrane fusion
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005484Molecular FunctionSNAP receptor activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MASSSDAWMR EYNEALKLSE DINGMMSERN SSGVTGPDAQ RRASAIRRKI TILGTRLDSL  60
QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KANQVASALN MSNFANRDSL LGPETKPDDA  120
MNRVSGMDNQ GIVGFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIEDLDY  180
HVDVTDSRLR RVQKSLAVMN KNMKGGCSCM SMLLSVLGIV GLALVIWLLV KYLKEEMVES  240
EYEQIRLKRV EENKKRMIEL NLNNLSQSLR LSSPSPKPSP AKARTPRTPV DSSEVRRSSR  300
AKNPPPSYKE FGLEPLERPR RSYQRRDLLN RVYASDDARV YAIERAEALQ SSLEPEFPSF  360
IKPMLQSHVT GGFWLGLPRQ FCHTHLPKYD EMITLVDENE DESVTKYLAD KNGLSGGWRG  420
FAIDHQLVDG DAVVFHLINP TTFKVYIVRV NDESNNGSGG SNEKELAIKP NKNQEEKNVS  480
EVPPLSNSGK RKRRGNNIGT NLSLVNLLLA IALMFKSCLL IGAGRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.54160.0leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146339001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3P6BNG70.0A0A3P6BNG7_BRACM; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-100B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]