PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00146482001

Common Name

GSBRNA2T00146482001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 445aa MW: 51065.9 Da PI: 7.7385

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00146482001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.5e-11	165	207	4	50
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +k rr+++NReAAr+sR+RKka++++Lee +L++ ++L e GSBRNA2T00146482001 165 DKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQEL----E 207 6899**************************888888777544....3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-5	157	220	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	164	208	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.7E-8	164	209	No hit	No description
Pfam	PF00170	1.9E-7	165	206	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.29E-6	166	208	No hit	No description
PROSITE pattern	PS00036	0	169	184	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.4E-30	248	322	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MLHSVLSSLR KKWSKNTLWK SHTSGLWALQ EFLVADIIWC VLHRYKRTIM SPFGSVKKAL 60 ISKQNKEEMM SSFSPTQLAS LRDMGIYEPF QQLVSWGNVY KSDINDHSPN TASSSVIQVD 120 ARVDDHNNIV KSNYNSSHNQ IEAEPCSNDH QDVDDDDDDD GRIHDKMKRR LAQNREAARK 180 SRLRKKAYVQ QLEESRLKLS QLEQELERAK QQGLRVSNSI PSGSITNTRI ATFEMEHSHW 240 LEEQSRRISE LRIALQAHIS DIELRMLVES CLNHYANLFR MKSDAAKADV FYLISGMWRT 300 CTERFFQWIG GFRPSELLNV VMPYLQPLTD QQVLEVRNLQ QSSQQAEDAL SQGIEKLQQS 360 LVENIVVDAF SMDYPPQMAA ALENLQALEG FVNQADHLRQ QTLQQMAKIL TTRQSARGLL 420 ALGEYLHRLR ALSSLWAARP REPT*

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MLHSVLSSLR KKWSKNTLWK SHTSGLWALQ EFLVADIIWC VLHRYKRTIM SPFGSVKKAL  60
ISKQNKEEMM SSFSPTQLAS LRDMGIYEPF QQLVSWGNVY KSDINDHSPN TASSSVIQVD  120
ARVDDHNNIV KSNYNSSHNQ IEAEPCSNDH QDVDDDDDDD GRIHDKMKRR LAQNREAARK  180
SRLRKKAYVQ QLEESRLKLS QLEQELERAK QQGLRVSNSI PSGSITNTRI ATFEMEHSHW  240
LEEQSRRISE LRIALQAHIS DIELRMLVES CLNHYANLFR MKSDAAKADV FYLISGMWRT  300
CTERFFQWIG GFRPSELLNV VMPYLQPLTD QQVLEVRNLQ QSSQQAEDAL SQGIEKLQQS  360
LVENIVVDAF SMDYPPQMAA ALENLQALEG FVNQADHLRQ QTLQQMAKIL TTRQSARGLL  420
ALGEYLHRLR ALSSLWAARP REPT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.21828	1e-153	leaf\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00146482001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013696054.1	0.0	transcription factor TGA7-like
Swissprot	Q93ZE2	0.0	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A3P6H3T0	0.0	A0A3P6H3T0_BRAOL; Uncharacterized protein
STRING	Bo6g121590.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	0.0	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]