PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00146527001
Common NameGSBRNA2T00146527001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 246aa    MW: 27018.7 Da    PI: 4.6969
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00146527001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-194191155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  GSBRNA2T00146527001 41 PCYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 91
                         68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-134191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3242100IPR001471AP2/ERF domain
SMARTSM003801.7E-3642105IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2242100IPR016177DNA-binding domain
PROSITE profilePS5103222.9854299IPR001471AP2/ERF domain
PRINTSPR003678.4E-114354IPR001471AP2/ERF domain
CDDcd000189.34E-2343101No hitNo description
PRINTSPR003678.4E-116581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTESSISSVK QPSPVEEETH HHREDEETHR TNKKKRARPD PCYRGVRMRT WGKWVSEIRE  60
PRKKSRIWLG TFSTAEMAAR AHDAAALTIK GPSAVLNFPE LATFLPRPAS SSPRDVQAAA  120
AVAAAMDFSS SSSSAVVISD PTTVVPESQL SSSSSYSSFT SSPTLSPSSE EAASSTAEEL  180
SEIVELPSLE TSYDEPWSEF VYVDPAYPPS SPWYFNNCYS FYYHSDETGT SMGEPFDSSN  240
FCLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1843991572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00245DAPTransfer from AT1G77200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00146527001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651327.21e-139ethylene-responsive transcription factor ERF037-like isoform X1
SwissprotO806541e-102ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A397YSN41e-174A0A397YSN4_BRACM; Uncharacterized protein
STRINGBra015686.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.11e-79ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]