PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00147414001

Common Name

GSBRNA2T00147414001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 254aa MW: 27334.4 Da PI: 10.1044

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00147414001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.1	7.6e-39	40	216	3	120
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ +s+ +++ GSBRNA2T00147414001 40 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASVSVRGSSTTIStstn 128 79***********************************************************99999777.233333333223334566 PP TCP 89 .......................................................kaaksaa.kskksqksaasalnlakesrakara 120 +++ + + +++++q++aa+al ++++++++a + GSBRNA2T00147414001 129 ctlsssldhkpfilgkrlredsgggkdemgsfatpagfwavparpdfgqvwsfasHQEMFLQqQQQQQQQPAAAALFVHQQQQQQAAM 216 777788888899999999999999999***********************998555555525555555555555555555555443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.9E-35	45	205	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.892	45	99	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MSNNNNDDGV MISNGSLIEH QRQQQQQQNL KQSSDGGLVV KKPPAKDRHS KVDGRGRRIR 60 MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TASVSVRGSS 120 TTISTSTNCT LSSSLDHKPF ILGKRLREDS GGGKDEMGSF ATPAGFWAVP ARPDFGQVWS 180 FASHQEMFLQ QQQQQQQQPA AAALFVHQQQ QQQAAMGEAS AARVGNYLPG HLNLLASLSG 240 GAPGSGRRED DQR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00147414001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB007648	2e-40	AB007648.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKD15.
GenBank	AK118679	2e-40	AK118679.1 Arabidopsis thaliana At5g23280 mRNA for unknown protein, complete cds, clone: RAFL19-95-A03.
GenBank	CP002688	2e-40	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013736882.1	1e-154	transcription factor TCP7
Swissprot	Q9FMX2	1e-107	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A3P5YJI4	0.0	A0A3P5YJI4_BRACM; Uncharacterized protein
STRING	Bo7g097790.1	1e-152	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-59	TCP family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]