PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147450001
Common NameGSBRNA2T00147450001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 328aa    MW: 36857 Da    PI: 8.8608
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147450001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.4e-14117161347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ +++ + +++G+g+W++I+r++  +Rt+ q+ s+ qky
  GSBRNA2T00147450001 117 AWTPDEHSQFLIGLEKYGKGDWRSISRHLVVTRTPTQVASHAQKY 161
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.258862IPR017884SANT domain
SMARTSM007178.1E-7961IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-101165IPR009057Homeodomain-like
CDDcd001671.63E-61259No hitNo description
Gene3DG3DSA:1.10.10.603.2E-10108163IPR009057Homeodomain-like
PROSITE profilePS5129418.754109166IPR017930Myb domain
SuperFamilySSF466893.38E-16111167IPR009057Homeodomain-like
SMARTSM007173.8E-10114164IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.1E-15114164IPR006447Myb domain, plants
CDDcd001679.00E-10117162No hitNo description
PfamPF002495.6E-12117161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSIGEKTSGG SSWSRDDDIA FEKALAIYAD ETEDRWEKIA GVVHGKTLEQ VLKRYEVLLR  60
DVLMIELSYV SLPEYDSSEG THAKDTNISE YGIIDRKCED TQECKPKLKQ RRRKGIAWTP  120
DEHSQFLIGL EKYGKGDWRS ISRHLVVTRT PTQVASHAQK YFSRLNSKTK NKTRQSIHDR  180
DVGESSNTSA MHSPNTWQNT QATSQPSQDH HPTYSTPTLW NTQATLQQPQ DHPMYGTPTK  240
WNMQAALQPS VNIPIYGTHT VDQSMVGHRV SPFGSNMNRL APPHMAYGVQ HHSAPYSSVS  300
RAPYSSVPSA PFNMAASYNM TYAPTSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-121085883RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147450001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013647161.10.0transcription factor SRM1
TrEMBLA0A3P5YW240.0A0A3P5YW24_BRACM; Uncharacterized protein
STRINGBra009699.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-115Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]