PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147709001
Common NameGSBRNA2T00147709001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31893.3 Da    PI: 6.3165
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147709001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.25.6e-151150342
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                         i +k+ r +tf kR+ gi+KK +EL +LC++e++ +++  
  GSBRNA2T00147709001 11 IPDKTSRRTTFKKRKGGIMKKLHELVTLCGVEACAVVYNG 50
                         7899******************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.638149IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-14161IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-9323IPR002100Transcription factor, MADS-box
CDDcd002661.88E-24370No hitNo description
SuperFamilySSF554551.83E-18382IPR002100Transcription factor, MADS-box
PfamPF003191.1E-151154IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVRSRVKLSL IPDKTSRRTT FKKRKGGIMK KLHELVTLCG VEACAVVYNG AEEVISKFMG  60
FPRVEREKKM YDQERYTGER IMKEEATLER VKDENRELEL KEIMFDLLKG KRMMEHHSSD  120
ARAVNELCEF IDYNVSEITK RIHMLQANGG TVSYPPLDVA LFHNQVPTNF SGHVPYQNMM  180
NYQEPVQYQV PDNGMGLDMN HNLSESFSQY PNLHDQPYLN QLMAQTQQMS YAEELASLAA  240
MDNNNYQLPS TSYMPSMELS ALNTNNNPWP TRFGLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147709001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009151151.11e-176PREDICTED: MADS-box transcription factor PHERES 2
TrEMBLA0A3P5YK881e-176A0A3P5YK88_BRACM; Uncharacterized protein
STRINGBra009911.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-39AGAMOUS-like 38
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]