PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00147827001

Common Name

GSBRNA2T00147827001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 545aa MW: 61685.1 Da PI: 5.8233

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00147827001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89	5.3e-28	57	141	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m+ ++r++++k+plWeevs+km e g+ r++k+Ckek+en+ k++k++keg+ ++ ++ +t+++fdqlea GSBRNA2T00147827001 57 RWPRQETVALLKIRSDMGIAFRDASAKGPLWEEVSRKMGELGYIRNAKKCKEKFENVYKYHKRTKEGRTGK--PEGKTYRFFDQLEA 141 8******************************************************************95..55568*****85 PP
2	trihelix	103.1	2.1e-32	365	450	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k e+ aLi++r+++++++ ++ k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +++s+tcpyf+ql+a GSBRNA2T00147827001 365 RWPKVEIEALIKLRTNLDSKYLENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PQDSKTCPYFHQLDA 450 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.059	54	116	IPR001005	SANT/Myb domain
Pfam	PF13837	2.0E-17	56	142	No hit	No description
PROSITE profile	PS50090	6.876	56	114	IPR017877	Myb-like domain
CDD	cd12203	4.45E-21	56	121	No hit	No description
PROSITE profile	PS50090	7.201	358	422	IPR017877	Myb-like domain
SMART	SM00717	0.0022	362	424	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-4	363	421	IPR009057	Homeodomain-like
Pfam	PF13837	2.9E-21	364	451	No hit	No description
CDD	cd12203	2.80E-25	364	429	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MEFGGGTTTT STTSEAPRPP QSNDAAAATE AAAAAATVGA FEVSEEMNDR GGFGGNRWPR 60 QETVALLKIR SDMGIAFRDA SAKGPLWEEV SRKMGELGYI RNAKKCKEKF ENVYKYHKRT 120 KEGRTGKPEG KTYRFFDQLE ALETHHHQQH QPPQPQTQPP LRPHNNNSSM FSTPPPVTTT 180 IIPPTTTPSF PNISGDFPSD NSTSSSSSYS TSSDVDIGGG GRKKKRKRKW KEFFERLMKQ 240 VVDKQEELQR QFLEAVEKRE RERLVREESW RAQEIARINR EREILAQERS MSAAKDAAVM 300 EFLQKFSEKP TAPPQQQPQV NNNNNQLQTS QPPPAPLPPQ PTLETAKTDN GDQTMTTPAS 360 ASSSRWPKVE IEALIKLRTN LDSKYLENGP KGPLWEEISA GMRRLGFNRN SKRCKEKWEN 420 INKYFKKVKE SNKKRPQDSK TCPYFHQLDA LYRERNKFQT TTNINVASSS STKPDNSVPL 480 MVQPEQQWPP ATDHPAQPLD QSFDDEEGTD EEDYDDEEED EENEEEEGEF ELVPSNDNKT 540 TNNV*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MEFGGGTTTT STTSEAPRPP QSNDAAAATE AAAAAATVGA FEVSEEMNDR GGFGGNRWPR  60
QETVALLKIR SDMGIAFRDA SAKGPLWEEV SRKMGELGYI RNAKKCKEKF ENVYKYHKRT  120
KEGRTGKPEG KTYRFFDQLE ALETHHHQQH QPPQPQTQPP LRPHNNNSSM FSTPPPVTTT  180
IIPPTTTPSF PNISGDFPSD NSTSSSSSYS TSSDVDIGGG GRKKKRKRKW KEFFERLMKQ  240
VVDKQEELQR QFLEAVEKRE RERLVREESW RAQEIARINR EREILAQERS MSAAKDAAVM  300
EFLQKFSEKP TAPPQQQPQV NNNNNQLQTS QPPPAPLPPQ PTLETAKTDN GDQTMTTPAS  360
ASSSRWPKVE IEALIKLRTN LDSKYLENGP KGPLWEEISA GMRRLGFNRN SKRCKEKWEN  420
INKYFKKVKE SNKKRPQDSK TCPYFHQLDA LYRERNKFQT TTNINVASSS STKPDNSVPL  480
MVQPEQQWPP ATDHPAQPLD QSFDDEEGTD EEDYDDEEED EENEEEEGEF ELVPSNDNKT  540
TNNV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	228	KKKRKRK
2	223	228	KKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00147827001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592300.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-144	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A3N6PNZ0	0.0	A0A3N6PNZ0_BRACR; Uncharacterized protein
STRING	Bo6g120870.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4849	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-174	Trihelix family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]