PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147867001
Common NameGSBRNA2T00147867001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 231aa    MW: 25272.6 Da    PI: 4.7414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147867001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-194191155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +gy+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  GSBRNA2T00147867001 41 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 91
                         79*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-134191IPR001471AP2/ERF domain
CDDcd000185.87E-2341101No hitNo description
SMARTSM003801.6E-3642105IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2242100IPR016177DNA-binding domain
PROSITE profilePS5103223.3544299IPR001471AP2/ERF domain
PRINTSPR003677.6E-114354IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3243100IPR001471AP2/ERF domain
PRINTSPR003677.6E-116581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTESSISSVK LPSPPEEETH HHQEDEETHR TNNKKRARPD PGYRGVRMRT WGKWVSEIRE  60
PRKKSRIWLG TFSTAEMAAR AHDAAALTIK GPSAVLNFPE LATFLPRPAS SSPRDVQAAA  120
AVAAAMDFSS SSSSASQLSS SSSYSSFTSS SSLSPSSEEA ASSTVEELSE IVELPSLDNE  180
PWSEFVYVDP GYPPSSPWYF NNCYSFYYHS DETGTSMGEP FDSSSFCLFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1843991572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147867001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042601e-100AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608751e-100AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026841e-100CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464371e-100DQ446437.1 Arabidopsis thaliana clone pENTR221-At1g77200 AP2 domain-containing transcription factor TINY (At1g77200) mRNA, complete cds.
GenBankDQ6529381e-100DQ652938.1 Arabidopsis thaliana clone 0000016559_0000011559 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691264.11e-119ethylene-responsive transcription factor ERF037-like
SwissprotO806546e-90ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLA0A3P6G1R21e-118A0A3P6G1R2_BRAOL; Uncharacterized protein
STRINGBo6g121150.11e-117(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.11e-42ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]