PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00147907001
Common NameGSBRNA2T00147907001, LOC106357350, LOC106385936, LOC106385937
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 235aa    MW: 25749.3 Da    PI: 5.4785
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00147907001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-184090155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  GSBRNA2T00147907001 40 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 90
                         59*****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.88E-184098No hitNo description
PROSITE profilePS5103221.9184198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-304199IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-204199IPR016177DNA-binding domain
SMARTSM003802.4E-3441104IPR001471AP2/ERF domain
PfamPF008471.5E-114190IPR001471AP2/ERF domain
PRINTSPR003675.5E-94253IPR001471AP2/ERF domain
PRINTSPR003675.5E-96480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVKQERKIQV TTSSSSLSQS SSFTSSSLAL HHQSGKDKIK KYKGVRMRSW GSWVSEIRAP  60
NQKTRIWLGS YSTAEAAARA YDAALLCLKG PKANLNFPST TSQFLIDIDE KTPLSPKSIQ  120
KVAAQAANSI SSDVFTPPSL SNDADDHHDD GIQNHPSPSS SAASSPPDDH HNDDDLVSLM  180
ASFADEHVSL MDPSWYDHSE MFFINGAFDY SPHSSKTTMD DLYDDADIQL WSFS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.142195e-54seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00147907001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893700.0AC189370.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB047M06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652484.11e-171ethylene-responsive transcription factor ERF013-like
RefseqXP_013681289.11e-171ethylene-responsive transcription factor ERF013-like
RefseqXP_013681290.11e-171ethylene-responsive transcription factor ERF013-like
SwissprotQ9CAP45e-80ERF13_ARATH; Ethylene-responsive transcription factor ERF013
TrEMBLA0A3P6H3Q71e-166A0A3P6H3Q7_BRAOL; Uncharacterized protein
STRINGBo6g121400.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77640.19e-80ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]